View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_9 (Length: 442)
Name: NF9308_low_9
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 14596271 - 14596695
Alignment:
| Q |
1 |
atgctccacctataaacttactccattgtgggtttgcgctataaatggttctagaaaatgcaaccacaatggcaatcacatttaccattgcgataacaat |
100 |
Q |
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||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596271 |
atgctcctcctataaacttactccattgtggattcgcgctataaatggttctagaaaatgcaaccacaatggcaatcacatttaccattgcgataacaat |
14596370 |
T |
|
| Q |
101 |
tggtggaatcattagggagctccatttgactatatacaaatctgcgaaaatgtcatcgtcatcctctcctcctgatttagatgtcaaagtaaaagaaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596371 |
tggtggaatcattagggagctccatttgactatatacaaatctgcgaaaatgtcatcgtcatcctctcctcctgatttagatgtcaaagtaaaagaaatc |
14596470 |
T |
|
| Q |
201 |
tcaattccagcaatcactttaaggagtccttgtatgacagcagccagatgagcactagtgccggatatgagccaaaattgttcattcctccaccattgct |
300 |
Q |
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| T |
14596471 |
tcaattccagcaatcactttaaggagtccttgtatgacagcagccagatgagcactagtgccggatatgagccaaaattgttcattcctccaccactgct |
14596570 |
T |
|
| Q |
301 |
ctaactctatgccagaccatttaacctcaagaatggcaagccccaccaagcaaacggtcatggtgagcaagtagattaaaaaggcgatacttagggtttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596571 |
ctaactctatgccagaccatttaacctcaagaatggcaagccccaccaagcacacggtcatggtgagcaagtagattaaaaaggcgatacttagggtttg |
14596670 |
T |
|
| Q |
401 |
cacaataaaatatccggaaaacaat |
425 |
Q |
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| T |
14596671 |
cacaataaaatatccggaaaacaat |
14596695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 14612299 - 14611885
Alignment:
| Q |
1 |
atgctccacctataaacttactccattgtgggtttgcgctataaatggttctagaaaatgcaaccacaatggcaatcacatttaccattgcgataacaat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||||| |||||| |||||||||||||||||||||| || || ||||| |
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| T |
14612299 |
atgctcctcctataaacttactccattgtggaactgcactataaattgttctagaaaacgcaaccccaatggcaatcacatttaccatagcaatgacaat |
14612200 |
T |
|
| Q |
101 |
tggtggaatcattagggagctccatttgactatatacaaatctgcgaaaatgtcatcgtcatcctctcctcctgatttagatgtcaaagtaaaagaaatc |
200 |
Q |
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||| ||||||||||| ||| |||||||||| |||||||||||||| |||| ||||| ||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
14612199 |
tggaggaatcattagagaggtccatttgacaatatacaaatctgcataaatatcatcatcatcttctcctcctgatttggttgtcaaagtaaaagaaatc |
14612100 |
T |
|
| Q |
201 |
tcaattccagcaatcactttaaggagtccttgtatgacagcagccagatgagcactagtgccggatatgagccaaaattgttcattcctccaccattgct |
300 |
Q |
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| T |
14612099 |
tcaatgcctgctataacttttagcagtccttgtatcacagctgccaaatgagcactagtgccagaaatgagccaaaactgttcatttctccaccattgct |
14612000 |
T |
|
| Q |
301 |
ctaactctatgccagaccatttaacctcaagaatggcaagccccaccaagcaaacggtcatggtgagcaagtagattaaaaaggcgatacttagggtttg |
400 |
Q |
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| ||||||| || ||||| |||||||| ||||| |||||| |||||||||| ||||||||| ||||||||||||||||||||| | ||| |||||||| |
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| T |
14611999 |
ccaactctacaccggaccacttaacctcgagaattgcaagcgccaccaagcacacggtcatgaggagcaagtagattaaaaaggcaacactgagggtttg |
14611900 |
T |
|
| Q |
401 |
cacaataaaatatcc |
415 |
Q |
| |
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||||||||||||||| |
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|
| T |
14611899 |
cacaataaaatatcc |
14611885 |
T |
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