View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_90 (Length: 207)
Name: NF9308_low_90
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_90 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 47984020 - 47983842
Alignment:
| Q |
18 |
cagatcaccatacatcgttgcgcattgtcgtggcaactgaaactctagaaattgatgaagttcctctattgcaggtttatctgtttgaaacagaattttt |
117 |
Q |
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| T |
47984020 |
cagatcaccatacatcgttgcgcattgtcgtggcaactgaaactctagaaattgatgaagttcctctattgcaggtttatctgtttgaaacagaattttt |
47983921 |
T |
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| Q |
118 |
aaacagatgtaccaacatatattccaacagaaaataaaaatccagaagaagaaaaagtattgggcagaggaacaccaaa |
196 |
Q |
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| T |
47983920 |
aaacagatgtaccaacatatattccaacagagaataaaaatccagaagaagaaaaagtattgggcagaggaaaaccaaa |
47983842 |
T |
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Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 35116119 - 35116298
Alignment:
| Q |
18 |
cagatcaccatacatcgttgcgcattgtcgtggcaactgaaactctagaaattgatgaagttcctctattgcaggtttatctgtttgaaacagaattttt |
117 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
35116119 |
cagatcaccatacatcggtgcccattgtcgtggcaactgaaactctagaaattgatgaagttcttctattgcaggtttatctgtttgaaacagaattatt |
35116218 |
T |
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| Q |
118 |
aaacagatgtaccaacatatattccaacagaaaataaaaatccagaaga-agaaaaagtattgggcagaggaacaccaaa |
196 |
Q |
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||||||||||||||||||||||||||||| | |||| ||||||| |||| | ||||||||||||||||||||| |||||| |
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| T |
35116219 |
aaacagatgtaccaacatatattccaacaaagaatagaaatccataagagaaaaaaagtattgggcagaggaaaaccaaa |
35116298 |
T |
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