View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9309_high_1 (Length: 327)
Name: NF9309_high_1
Description: NF9309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9309_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 42393125 - 42392805
Alignment:
| Q |
1 |
cagatctttataaatagatttgggtactatattcactcttcatattacaatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgt |
100 |
Q |
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| T |
42393125 |
cagatctttataaatagatttggatactatattcactattcatattaccatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgt |
42393026 |
T |
|
| Q |
101 |
tgatgcttgaaaattgttcaaaacttcaatattgttaagaatagcaattcaatgagcttctacttacggagagcaccatttatcattgctggagttttta |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
42393025 |
tgatgcttgaaaattgttcaaaacttcaatgttgttaagaatagcaattcaacgagcttctacttacggagagcaccattgatcattgctagagttttta |
42392926 |
T |
|
| Q |
201 |
acaattttcaagtatttgtctgacatacaccatatgagacacttctctaccctagaaaccacctatcatatgaatattgatcaagggaatctagattcag |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392925 |
acaattttcaagtatttgtctaacatacaccatatgagacacttctctaccctagaaaccacctatcatatgaatattgatcaagggaatctagattcag |
42392826 |
T |
|
| Q |
301 |
cactcaatgctagtataatct |
321 |
Q |
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| ||||||||||||||||||| |
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| T |
42392825 |
cgctcaatgctagtataatct |
42392805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 42376573 - 42376447
Alignment:
| Q |
1 |
cagatctttataaatagatttgggtactatattcactcttcatattacaatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgt |
100 |
Q |
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|||||||||||||||||| | | || |||||||||| ||||||||| ||||| | ||||| |||| |||||||| |||||||||||| |||||| |
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| T |
42376573 |
cagatctttataaatagaatcgaatattatattcactattcatattatcatata-agcaattggtaggttgggaaagt---gtgtgtattctacgattgt |
42376478 |
T |
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| Q |
101 |
tgatgcttg-aaaattgttcaaaacttcaat |
130 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
42376477 |
tgatgcttgtaaaattgttcaaaacttcaat |
42376447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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