View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9309_high_3 (Length: 207)
Name: NF9309_high_3
Description: NF9309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9309_high_3 |
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| [»] scaffold0256 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 16977817 - 16977645
Alignment:
| Q |
18 |
ttttctgtatattgtaatttttctatttttctattacatgtttatatcatttggatcagttacatttaacataacaattaactctttatttacttatctt |
117 |
Q |
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| T |
16977817 |
ttttgtgtatattgtaatttttctatt-----attacatgtttatatcattttgatcagttacatttaaaataaaagttaactctttatttacttatctt |
16977723 |
T |
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| Q |
118 |
tcaggaaaggtgtgaaggaagcatgttcatataaatcttgacctcctagaatcagtgtatctaatatcttctatgcta |
195 |
Q |
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| T |
16977722 |
ttaggaaaggtgtgaaggaagcatgttcatataaatcttgagctcctggaatcagtgtatataatatcttctatgcta |
16977645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 16580239 - 16580286
Alignment:
| Q |
81 |
atttaacataacaattaactctttatttacttatctttcaggaaaggt |
128 |
Q |
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| T |
16580239 |
atttaacataacaattaactctttatttacttatctttccggaaaggt |
16580286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 16615141 - 16615094
Alignment:
| Q |
81 |
atttaacataacaattaactctttatttacttatctttcaggaaaggt |
128 |
Q |
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| T |
16615141 |
atttaacataacaattaactctttatttacttatctttccggaaaggt |
16615094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 16874099 - 16874146
Alignment:
| Q |
81 |
atttaacataacaattaactctttatttacttatctttcaggaaaggt |
128 |
Q |
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| T |
16874099 |
atttaacgtaacaattaactctttattttcttatctttccggaaaggt |
16874146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 11481 - 11420
Alignment:
| Q |
81 |
atttaacataacaattaactctttatttacttatctttcaggaaaggtgtgaaggaagcatg |
142 |
Q |
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| T |
11481 |
atttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatg |
11420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 11401 - 11349
Alignment:
| Q |
145 |
catataaatcttgacctcctagaatcagtgtatctaatatcttctatgctact |
197 |
Q |
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| T |
11401 |
catataaatctcgatctcctaggatcagtgtatctagtatctgctatgctact |
11349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 21629076 - 21629123
Alignment:
| Q |
145 |
catataaatcttgacctcctagaatcagtgtatctaatatcttctatg |
192 |
Q |
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| T |
21629076 |
catataaatcttgagctccttgaatcagtgtatctcatatctgctatg |
21629123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 21628995 - 21629039
Alignment:
| Q |
80 |
catttaacataacaattaactctttatttacttatctttcaggaa |
124 |
Q |
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| T |
21628995 |
catttaacatcacaattaactctttttttccttatatttcaggaa |
21629039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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