View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9309_low_10 (Length: 262)
Name: NF9309_low_10
Description: NF9309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9309_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 570485 - 570722
Alignment:
| Q |
19 |
ccattagtgaaaaatactnnnnnnnctacaaaataatctaactgaccatgatagaaattaaaccattggtgcaagtcaccaagtctttaaaacggctgaa |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
570485 |
ccattagtgaaaaatactaaaaaaactacaaaataatctaactgaccatgatagaaattaaaccattggtgcaagtcaccaagtctttaaaacggctgaa |
570584 |
T |
|
| Q |
119 |
agcatgtacgaaaagtaaccatccaaaacgatggcactcagatatacggttggtaacagacgacttattttcgacatttgcatcagttgacacgaagaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
570585 |
agcatgtacgaaaagtaaccatccaaaacgatggcactcagatatacggttggtaacagacgacttattttcaacatttgcatcagttgacacgaagaac |
570684 |
T |
|
| Q |
219 |
tcttcaaatacacgcttataatacctggcaccaccaaa |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
570685 |
tcttcaaatacacgcttataatacctggcaccatcaaa |
570722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 15102687 - 15102901
Alignment:
| Q |
47 |
caaaataatctaactgaccatgatagaaattaaaccattggtgcaagtcaccaagtctttaaaacggctgaaagcatgtac------------gaaaagt |
134 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15102687 |
caaaagaatctaactgaccatgatagaaattaaaccattggtgcaagtcaccaagtctttaaaacggctgaaagcatgtacacgaagggccaagaaaagt |
15102786 |
T |
|
| Q |
135 |
aaccatccaaaacgatggcactcagatatacggttggtaacagacgacttattttcgacatttgcatcagttgacacgaagaactcttcaaatacacgct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15102787 |
aaccatccaaaacgatggcactcagatacacggcccgtaacagacgacttattttcaacatttgcatcagttgacacgaagaactcttcaaatacacgct |
15102886 |
T |
|
| Q |
235 |
tataatacctggcac |
249 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15102887 |
tataatacctggcac |
15102901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University