View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9309_low_12 (Length: 241)

Name: NF9309_low_12
Description: NF9309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9309_low_12
NF9309_low_12
[»] chr3 (14 HSPs)
chr3 (50-228)||(19398707-19398882)
chr3 (91-228)||(19374695-19374832)
chr3 (139-228)||(19333047-19333135)
chr3 (18-62)||(19398655-19398699)
chr3 (18-62)||(18102373-18102417)
chr3 (164-231)||(18021952-18022019)
chr3 (176-231)||(18143390-18143445)
chr3 (163-231)||(18115038-18115106)
chr3 (164-231)||(18102538-18102604)
chr3 (164-211)||(18107542-18107589)
chr3 (125-168)||(19419015-19419058)
chr3 (164-211)||(19419084-19419131)
chr3 (163-202)||(19460608-19460647)
chr3 (127-166)||(24494369-24494408)
[»] chr6 (2 HSPs)
chr6 (164-215)||(13667837-13667888)
chr6 (164-231)||(13667708-13667775)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 19398707 - 19398882
Alignment:
Q  50 tattcaaagtcttgaagttttggaactatttcannnnnnnnctaacaatcagaccccatttgtatcaattgacactgttgtccacatactttcttatcaa 149  Q
    |||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19398707 tattcaaagtcttgaagttttgaaactatttcattttt---ctaacaatcagaccccatttgtatcaattgaaactgttgtccacatactttcttatcaa 19398803  T
Q  150 gccttttccaatttatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttct 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19398804 gccttttccaatttatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttct 19398882  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 19374695 - 19374832
Alignment:
Q  91 ctaacaatcagaccccatttgtatcaattgacactgttgtccacatactttcttatcaagccttttccaatttatcttatataagcacattaaaatctca 190  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19374695 ctaacaatcagaccccatttgtatcaatcgaaattgttgtccacatactttcttatcaagccttttccaatttatctaatataagcacattaaaatctca 19374794  T
Q  191 taataaatcataatccaatttgaattagacattcttct 228  Q
    ||| |||||||||||| |||||||||||||||||||||    
T  19374795 taacaaatcataatcccatttgaattagacattcttct 19374832  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 19333047 - 19333135
Alignment:
Q  139 tttcttatcaagccttttccaatttatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttct 228  Q
    ||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  19333047 tttcttagcaacctttttccaattt-tcttatataagcacattaaaatctcataacaaatcataatcccatttgaattagatattcttct 19333135  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 19398655 - 19398699
Alignment:
Q  18 agtttaaaacttgaggttcaaagaaattatattattcaaagtctt 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19398655 agtttaaaacttgaggttcaaagaaattatattattcaaagtctt 19398699  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 18102373 - 18102417
Alignment:
Q  18 agtttaaaacttgaggttcaaagaaattatattattcaaagtctt 62  Q
    |||||||||| |||||||||||||||||||||||||| |||||||    
T  18102373 agtttaaaacatgaggttcaaagaaattatattattccaagtctt 18102417  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 18021952 - 18022019
Alignment:
Q  164 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctctg 231  Q
    ||||||||||| |||| ||||||||||||| |||||||||| | | ||||||||||  ||||||||||    
T  18021952 atcttatataaccacagtaaaatctcataacaaatcataataccaattgaattagatcttcttctctg 18022019  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 18143390 - 18143445
Alignment:
Q  176 cacattaaaatctcataataaatcataatccaatttgaattagacattcttctctg 231  Q
    |||||||||||||||||| || ||||||| | |||||||||||| |||||||||||    
T  18143390 cacattaaaatctcataacaactcataattccatttgaattagatattcttctctg 18143445  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 18115038 - 18115106
Alignment:
Q  163 tatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctctg 231  Q
    ||||||||||||||||||||||||||||||  |||||||| |   |||||||||| |  ||||||||||    
T  18115038 tatcttatataagcacattaaaatctcataccaaatcatattttcatttgaattacatcttcttctctg 18115106  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 18102538 - 18102604
Alignment:
Q  164 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctctg 231  Q
    |||||||||||||||||| ||||||||||  ||||||||||   ||||||||||||  ||||||||||    
T  18102538 atcttatataagcacatt-aaatctcataccaaatcataatttcatttgaattagatcttcttctctg 18102604  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 18107542 - 18107589
Alignment:
Q  164 atcttatataagcacattaaaatctcataataaatcataatccaattt 211  Q
    ||||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  18107542 atcttatataaccacattgaaatctcataacaaatcataatcccattt 18107589  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 19419015 - 19419058
Alignment:
Q  125 tgttgtccacatactttcttatcaagccttttccaatttatctt 168  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||    
T  19419015 tgttgtccacatactttcttatcaaactttttccaatttgtctt 19419058  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 19419084 - 19419131
Alignment:
Q  164 atcttatataagcacattaaaatctcataataaatcataatccaattt 211  Q
    ||||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  19419084 atcttatataaccacattgaaatctcataacaaatcataatcccattt 19419131  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 19460608 - 19460647
Alignment:
Q  163 tatcttatataagcacattaaaatctcataataaatcata 202  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  19460608 tatcttatataagcacattaaaatctcataccaaatcata 19460647  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 24494408 - 24494369
Alignment:
Q  127 ttgtccacatactttcttatcaagccttttccaatttatc 166  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  24494408 ttgtccacatactttcttatcaagcttttttcaatttatc 24494369  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 13667888 - 13667837
Alignment:
Q  164 atcttatataagcacattaaaatctcataataaatcataatccaatttgaat 215  Q
    |||||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  13667888 atcttatataagcacattaaaatctcttaacaaatcataatcccatttgaat 13667837  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 13667775 - 13667708
Alignment:
Q  164 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctctg 231  Q
    |||||||||||||||||| ||||||||| | ||||||||| |  ||||||||||||  ||||||||||    
T  13667775 atcttatataagcacattgaaatctcatcacaaatcataaccatatttgaattagatcttcttctctg 13667708  T

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