View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9309_low_4 (Length: 312)
Name: NF9309_low_4
Description: NF9309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9309_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 28773916 - 28774200
Alignment:
| Q |
18 |
atgtctaactcattcttacaaaattgacggaagggtgggtgtcactctttacaaatccatttcatatcttatttccattcaatgtgagacttctgttttt |
117 |
Q |
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| T |
28773916 |
atgtctaactcattcttacaaaattgacggaagggtgggtgtccctctttacaaactcatttcatatcttatttccattcaatgtgagacttctgttttt |
28774015 |
T |
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| Q |
118 |
cacggtaacaacaaccattttcacaagttcaacaagacatacaagattataacacaagaatattactacctagtcctacgcccgtcaatatagaatctcg |
217 |
Q |
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| T |
28774016 |
cacggtaacaacaaccattttcacaagttcaacaagacatacaagattataacacaagaatattactacctagtcctacacccgtcaatatagaatctcc |
28774115 |
T |
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| Q |
218 |
ttgactaaatcatcagaattaagaaagtttgcagtggtattaaatttactacaattggtaatttcattaaatccaaaccgaacac |
302 |
Q |
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| T |
28774116 |
ttgactaaatcatcagaattaagaaagtttgcagtggtattaaatttactacaattggtaatttcattaaatccaaaccgaacac |
28774200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 28767169 - 28767218
Alignment:
| Q |
127 |
aacaaccattttcacaagttcaacaagacatacaagattataacacaaga |
176 |
Q |
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| T |
28767169 |
aacaaccattttcacaagttcaacatacaatacaagattataacacaaga |
28767218 |
T |
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