View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9309_low_8 (Length: 295)
Name: NF9309_low_8
Description: NF9309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9309_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 3659632 - 3659355
Alignment:
| Q |
1 |
agagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttaca |
100 |
Q |
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| T |
3659632 |
agagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcattaca |
3659533 |
T |
|
| Q |
101 |
ttatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatc |
200 |
Q |
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| T |
3659532 |
ttatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattggattctaggacaatttgattggacttagattgtttggtaattggtagatc |
3659433 |
T |
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| Q |
201 |
tcatctgtgtgtctaattggcatatgattcataaatggatttgttatgttccactttaattggcatttagataattgtg |
279 |
Q |
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| T |
3659432 |
tcatctgtgtgtctaattggcatttggtt-ataaatggatttgttatgttccacttcaattggaatttagataagtgtg |
3659355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 3653366 - 3653106
Alignment:
| Q |
1 |
agagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttaca |
100 |
Q |
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| T |
3653366 |
agagaagattctgttctctgctccactgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttaca |
3653267 |
T |
|
| Q |
101 |
ttatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatc |
200 |
Q |
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| T |
3653266 |
ttatattcatgtaaggttttgtttaccctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatc |
3653169 |
T |
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| Q |
201 |
tcatctgtgtgtctaattggcatatgattc-ataaatggatttgttatgttccactttaattg |
262 |
Q |
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| T |
3653168 |
tcatctgcgtgtctaattggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 3649257 - 3649181
Alignment:
| Q |
2 |
gagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
78 |
Q |
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|||||| ||||| |||| | || |||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
3649257 |
gagaagcttctgctctcagttctattgccacttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 3657368 - 3657199
Alignment:
| Q |
2 |
gagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacat |
101 |
Q |
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|||||| |||||||||| ||| ||||||| ||||||||||| |||| ||| |||||||||| || ||||| | |||| || |||||||| | | || |
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| T |
3657368 |
gagaagcttctgttctcagctgcattgccgcttaaaatggagagcaagact----tgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaat |
3657273 |
T |
|
| Q |
102 |
tatattcatgtaaggctttgtctac---cctttgatttgtaatgtttgattgtattctaggagaatttgattggact |
175 |
Q |
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| T |
3657272 |
tat---catttaaggctttgtttgtttacatttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
20 |
gctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
78 |
Q |
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| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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