View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9310_high_12 (Length: 301)
Name: NF9310_high_12
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 3592696 - 3592426
Alignment:
| Q |
19 |
aacatataacattgaagttactatgcttattttaagaaatgacaatcatatttcgtcttcatggcttttatccattttttgtgctgggtaggttgtagtt |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3592696 |
aacatataacattgaagttgctatgcttattttaagaaatgacaatcatatttcgtcttcatggcttttatccattttttgtgctgggtaggttgtagtt |
3592597 |
T |
|
| Q |
119 |
ctaattggtggtgctgccagtgcggttgatatttctcgagacgtggctaccgttgctaaagaagttcatattgcagctaggtctgttgaagaagataagc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3592596 |
ctaattggtggtgctgccagtgcggttgatatttctcgagacgtggcaaccgttgctaaagaagttcatattgcagctaggtctgttgaagaagataagc |
3592497 |
T |
|
| Q |
219 |
ttggaaagttacctggccatgataacatgtggcttcattctatggtaaaacttgttatttatggtgagaat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3592496 |
ttggaaagttacctggccatgataacatgtggcttcattctatggtaaaacttgttatttatggtgagaat |
3592426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University