View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_high_18 (Length: 263)
Name: NF9310_high_18
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_high_18 |
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| [»] scaffold0204 (2 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 51194257 - 51194176
Alignment:
| Q |
167 |
tcatttaattaggttaatatatcattccatcccataccctttaaattgga-ggggaagcaaaatgagagtaagtgatggaat |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51194257 |
tcatttaattaggttaatatatcattccatcccataccctttaaattggagggggaagcaaaatgagagtaagtgatggaat |
51194176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51194420 - 51194376
Alignment:
| Q |
1 |
taaaaatataaatatgaaacaaacatcacccaaaaaaatacattt |
45 |
Q |
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| T |
51194420 |
taaaaatataaatatgaaacaaacatcacccagaaaaatacattt |
51194376 |
T |
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Target: scaffold0204 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 12353 - 12436
Alignment:
| Q |
164 |
ttatcatttaattaggttaatatatcattccatcccataccctttaaattggaggggaagcaaaatgagagtaagtgatggaat |
247 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
12353 |
ttattatttaattaggttaatatatcattccatctcatacccttcaaattggaggggaagcaagatgagagtaagtgatggaat |
12436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12193 - 12245
Alignment:
| Q |
1 |
taaaaatataaatatgaaacaaacatcacccaaaaaaatacatttggttggga |
53 |
Q |
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|||||||||||||| ||||||||||||||| | ||||||||||| |||||||| |
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| T |
12193 |
taaaaatataaatacgaaacaaacatcaccaagaaaaatacattcggttggga |
12245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 46142047 - 46141988
Alignment:
| Q |
188 |
tcattccatcccataccctttaaattggaggggaagcaaaatgagagtaagtgatggaat |
247 |
Q |
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|
| T |
46142047 |
tcattccatcccataccctccaaattggaggggaagcaaaatgagagtaagtgatggaat |
46141988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 34495021 - 34495059
Alignment:
| Q |
209 |
aaattggaggggaagcaaaatgagagtaagtgatggaat |
247 |
Q |
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| T |
34495021 |
aaattggagggtaagcaatatgagagtaagtgatggaat |
34495059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 13105955 - 13105896
Alignment:
| Q |
188 |
tcattccatcccataccctttaaattggaggggaagcaaaatgagagtaagtgatggaat |
247 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
13105955 |
tcattccatcccataccctccaaattggagtggaagcaaaatgagagtaagtgatggaat |
13105896 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 22473664 - 22473718
Alignment:
| Q |
193 |
ccatcccataccctttaaattggaggggaagcaaaatgagagtaagtgatggaat |
247 |
Q |
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|||||||||||| | | ||||||||| |||||||||||||||||||||||||||| |
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| T |
22473664 |
ccatcccataccttctgaattggaggtgaagcaaaatgagagtaagtgatggaat |
22473718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 13016276 - 13016238
Alignment:
| Q |
209 |
aaattggaggggaagcaaaatgagagtaagtgatggaat |
247 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
13016276 |
aaattggagggtaagcaaaatgagagtaagtgatggaat |
13016238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 281227 - 281189
Alignment:
| Q |
209 |
aaattggaggggaagcaaaatgagagtaagtgatggaat |
247 |
Q |
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||||||||||| |||||| |||||||||||||||||||| |
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| T |
281227 |
aaattggagggtaagcaagatgagagtaagtgatggaat |
281189 |
T |
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