View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_high_19 (Length: 260)
Name: NF9310_high_19
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_high_19 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 45 - 244
Target Start/End: Complemental strand, 416889 - 416690
Alignment:
| Q |
45 |
agaaagtgatccacaacaaatgcctcaaaaactaatgaatcaacaatactcattaagtgcataatcattgattaacatcttaaataaataagggactaga |
144 |
Q |
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| T |
416889 |
agaaagtgatccacaacaaatgcctcaaaaactaatgaatcaacaatactcattaagtgcataatcattgattaacatcttaaataaataagggacgaga |
416790 |
T |
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| Q |
145 |
aacaaatattataaaacattagaatgcctatataatagtttgattcgttgatgtatcatgaattccattatttataagaatagaatataaataaatattc |
244 |
Q |
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| T |
416789 |
aacaaatattataaaacattagaatgcctatataatagtttgatccgttggtgtatcatgaattccattattattaagaatagaatataaataaatattc |
416690 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 11680470 - 11680387
Alignment:
| Q |
160 |
acattagaatgcctatataatagtttgattcgttgatgtatcatgaattccattatttataagaatagaatataaataaatattc |
244 |
Q |
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| T |
11680470 |
acattagagcgccaatataatagtttgatccattggtgtttcatgaattccatta-ttattggaatagaatataaataaatattc |
11680387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 47749343 - 47749297
Alignment:
| Q |
44 |
gagaaagtgatccacaacaaatgcctcaaaaactaatgaatcaacaa |
90 |
Q |
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| T |
47749343 |
gagaaagtgattcacaacaaatgccttaaaaactaataaatgaacaa |
47749297 |
T |
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