View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_high_24 (Length: 250)
Name: NF9310_high_24
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43288783 - 43289021
Alignment:
| Q |
1 |
aaaccgtgcttttgtagctctcatctatgccactagtgtgttgttgagttctgttttgataatgacttgtttgaggctaagtttggatgccttttgagct |
100 |
Q |
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| T |
43288783 |
aaaccgtgcttttgtagctctcatctatgccactagtgtgttgttgagttctgttttgataatgacttgtttgaggctaactttggatgccttttgagct |
43288882 |
T |
|
| Q |
101 |
tacggtctaattttgaatatgttataatgcatcatgaattttggttcttttcaaatattattagcactgtcatgtcaaaaatttgatttcaccctgaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |||||| |
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| T |
43288883 |
tacggtctaattttgaatatgttataatgcatcatgaattttggttcttttcaaatattattagtactattatgtcaaaaatttgatttcaccttgaagt |
43288982 |
T |
|
| Q |
201 |
taattttaaagtatatgttatatacattctaagagtatt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43288983 |
taattttaaagtatatgttatatacattctaagagtatt |
43289021 |
T |
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