View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_high_29 (Length: 243)
Name: NF9310_high_29
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 3592936 - 3592713
Alignment:
| Q |
19 |
caccctttcttttcaggcattaatgcatggccagggaagcaaatgcatagccataattacagaacacccgagccctttcaagatcaagtaagtaatatgc |
118 |
Q |
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| T |
3592936 |
caccctttcttttcaggcattaatgcatggccagggaagcaaatgcatagccataattacagaacacccgagccctttcaagatcaagtaagtaatatgc |
3592837 |
T |
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| Q |
119 |
ttagttatattgatactagttccattaatattcttttttagttaaaataaaacaattgtactccaaagtcaacaaattcaaatcatttatagctgatttg |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| |
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| T |
3592836 |
ttagttatattgatactagttccattagtattcttttttagttaaaataaaacaatagtactcgaatgtcaacaaattcaaatcatttatagctgatttg |
3592737 |
T |
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| Q |
219 |
tttctgtgttggtttgtagtttca |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
3592736 |
gttctgtgttggtttgtagtttca |
3592713 |
T |
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