View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_high_3 (Length: 586)
Name: NF9310_high_3
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_high_3 |
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| [»] scaffold0205 (1 HSPs) |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 14 - 563
Target Start/End: Original strand, 21178676 - 21179225
Alignment:
| Q |
14 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21178676 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagtgtaaagac |
21178775 |
T |
|
| Q |
114 |
acgcagctatagagaaataaaagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
21178776 |
acgcagctatagagaaataaaagttgtgttgtggtttaacgaacgacacaaatttcagtttttgtgttatcccttacctccaatttgtcttgtccttaaa |
21178875 |
T |
|
| Q |
214 |
tcagttttacaattcatatactatacaccaagagttgtcttatcctttgtttcattcttttgcaggtcaaatgcacccttatattaaattaaatgcatgt |
313 |
Q |
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|||||||||||||||| | | |||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21178876 |
tcagttttacaattcaaacattatacatcaagagttgtcttatcttgtgtttcattcttttgcaggtcaaatgcacccttatattaaattaaatgcatgt |
21178975 |
T |
|
| Q |
314 |
gtaaagaattttacattatagatgcataaaaactaatatcttaaatagaatattacaaaatggatatcatctaatctcatcacatatctacattctaatc |
413 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21178976 |
gtaaagaattttacatcatagatgcataaaaactaatatcttaaatagaatattacaaaatggatatcatctaatctcatcacatatctacattctaatc |
21179075 |
T |
|
| Q |
414 |
caaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccactaatcctttcaattagcgattggaataaactcattctttatt |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21179076 |
caaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccactaatcctttcaattagcgattggaataaactcattctttctt |
21179175 |
T |
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| Q |
514 |
aactcaatttgacgactaaaacacccaagaacacttggatgggatgataa |
563 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
21179176 |
aactcaatttgacgactaaaacactcaagagcacttggatgggatgataa |
21179225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 2897 - 2776
Alignment:
| Q |
14 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2897 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagtgtaaagac |
2798 |
T |
|
| Q |
114 |
acgcagctatagagaaataaaa |
135 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2797 |
acgcagctatagagaaataaaa |
2776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 28360764 - 28360643
Alignment:
| Q |
14 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagac |
113 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
28360764 |
aacctgtgccaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacatctagtgtaaagac |
28360665 |
T |
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| Q |
114 |
acgcagctatagagaaataaaa |
135 |
Q |
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|||||||||||||||||||||| |
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| T |
28360664 |
acgcagctatagagaaataaaa |
28360643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 18273992 - 18273870
Alignment:
| Q |
13 |
gaacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaaga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
18273992 |
gaacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagattaaaga |
18273893 |
T |
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| Q |
113 |
cacgcagctatagagaaataaaa |
135 |
Q |
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||| ||||||||||||||||||| |
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| T |
18273892 |
cacacagctatagagaaataaaa |
18273870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 37695573 - 37695503
Alignment:
| Q |
132 |
aaaagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatc |
202 |
Q |
| |
|
|||||||||||||||| || | || ||||| |||| ||||||||||| || || |||||||||||||||| |
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| T |
37695573 |
aaaagttgtgttgtggtttgatgagggacaaaaatatcagtttttgtcttgtctcttacctccaatttatc |
37695503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 41934632 - 41934740
Alignment:
| Q |
132 |
aaaagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaatcagttttacaattcata |
231 |
Q |
| |
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|||||||||||||||| ||| |||| ||| ||||||||||||||| || || ||| | |||| ||||||| ||| | |||||||||||||| ||| | |
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| T |
41934632 |
aaaagttgtgttgtggtttagtgaagtacaagaatttcagtttttgtcttgtcttttgcatccagtttatctcatcccttaatcagttttacaaatcaca |
41934731 |
T |
|
| Q |
232 |
tactataca |
240 |
Q |
| |
|
|||||||| |
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| T |
41934732 |
cactataca |
41934740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 39792869 - 39792956
Alignment:
| Q |
134 |
aagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaatcagtttt |
221 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||| ||||||| |||| ||| |||||||||||||||||| |||| ||||||| |
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|
| T |
39792869 |
aagttgtgttgtggtttggtgaaggacaagaatttcaatttttgtcatatcttttgtctccaatttatcttgtccctaaaacagtttt |
39792956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0650 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 1688 - 1595
Alignment:
| Q |
132 |
aaaagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaatcagttttacaa |
225 |
Q |
| |
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|||||||||||||||| || || ||||| |||||||||||||||| || ||| || |||||| ||| || | ||||| || ||||||||||| |
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| T |
1688 |
aaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcttgtcccttgcctccagtttgtcctatccttgaaacagttttacaa |
1595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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