View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_18 (Length: 437)
Name: NF9310_low_18
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 33994946 - 33995355
Alignment:
| Q |
17 |
acattcctaccctttaagtatttcaaaagaggaaacattgaaacagttgacatcttttgaagcaggttgaagcaaaacattataaaatgactgttagtga |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33994946 |
acattcctaccctttaagtatttcaaaagatgaaacattgaaacagttgacatcttttgaagcaggttgaagcaaaacattataaa-tgactgttagtga |
33995044 |
T |
|
| Q |
117 |
tagtgagagtatcaaactccatgatccccatcagcagttgtctggacttgagaagcatactgcaagttccaaaggacatcctcaatcaatggccgactcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33995045 |
tagtgagagtatcaaactccatgatccccatcagcagttgtctggacttgagaagcatactgcaagttccaaaggacatcctcaatcgatggccgactcc |
33995144 |
T |
|
| Q |
217 |
acgactcggtagatatacacttgttagttatagaaatcacaatagatagagattctttgcagcaagtagcttgcagaacttggtccaatatttgaaggaa |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33995145 |
acgacttggtagatatacacttgttagttatagaaatcacaatagatagagattctttgcagcaagtagcttgcagaacttggtccaatatttgaaggaa |
33995244 |
T |
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| Q |
317 |
gcctgtaaattggagtatgctgaattaactatcttagcgagtttagcaggatagttatgagaacaatttatatcttatatataaaaacagtttaaccgca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33995245 |
gcctgtaaattggagtatgctgaattaactatcttagcgagtttagcaggatagttatgagaacaatttatatcttatatataaaaacagtttaaccgca |
33995344 |
T |
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| Q |
417 |
ttctacctatg |
427 |
Q |
| |
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||||||||||| |
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| T |
33995345 |
ttctacctatg |
33995355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 34001213 - 34001512
Alignment:
| Q |
17 |
acattcctacccttt-aagtatttcaaaagaggaaacattgaaacagttgacatcttttgaagcaggttgaagcaaaacattataaaatgact--gttag |
113 |
Q |
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|||||| |||||||| ||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||||||| | | || ||||| || |
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| T |
34001213 |
acattcttacccttttaagtatttcaaaatatgaaacaccgaaacagttgacatgttttgaagcaggttgaagcaaaaaactcagaactgactctgtcgc |
34001312 |
T |
|
| Q |
114 |
tgat--agtgagagtatcaaactccatgatccccatcagcagttgt-ctggacttgagaagcatactgcaagttccaaaggacatcctcaatcaatggcc |
210 |
Q |
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|||| |||| |||||||||| | |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| | || | |
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| T |
34001313 |
tgatgtagtgggagtatcaaatcctgtgatccccgtcagctgttgttctggacttgagaagcatactgcaagttccaaaggacatcctcgatcgaaggtc |
34001412 |
T |
|
| Q |
211 |
gactccacgactcggtagatatacacttgttagttatagaaatcacaatagatagagattctttgcagcaagtagcttgcagaacttggtccaatatttg |
310 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |
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| T |
34001413 |
gactccacgactcggtagatatacacttgtttgttatagaaatcacaatagatagagattctttgcagcaagtagcttgcacaactgggtccactatttg |
34001512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 34001533 - 34001578
Alignment:
| Q |
309 |
tgaaggaagcctgtaaattggagtatgctgaattaactatcttagc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34001533 |
tgaaggaagcctgtaaattggagtatgctgaattaactatcttagc |
34001578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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