View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9310_low_19 (Length: 410)
Name: NF9310_low_19
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_19 |
 | |
|
| [»] scaffold0508 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 24)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 7765550 - 7765165
Alignment:
| Q |
18 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7765550 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttaatttcaaagggaaaataagagtctggaagggaac |
7765451 |
T |
|
| Q |
118 |
agttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7765450 |
agttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagt |
7765351 |
T |
|
| Q |
218 |
gtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagac |
317 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7765350 |
gtgttttgcatggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagac |
7765251 |
T |
|
| Q |
318 |
ttcaccggtaacctcaacagaaattgaatgatcagttcttgaggaaaatccatgctttgagcagcgttattcttcactctctgctt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7765250 |
ttcaccggtaacctcaacagaaattgaatgatcagttcttgaggaagatccatgctttgagcagcgttattcttcactctctgctt |
7765165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 7786372 - 7786000
Alignment:
| Q |
18 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaac |
117 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7786372 |
gatggattccatatgtaaatgtttggatgacgatacataaatataaaacctctacatgaccctttaatttcaaagggaaaataagagtctggaagggaac |
7786273 |
T |
|
| Q |
118 |
agttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7786272 |
agttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagt |
7786173 |
T |
|
| Q |
218 |
gtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagac |
317 |
Q |
| |
|
||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| | || ||||| |
|
|
| T |
7786172 |
gtgttttgtaaggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagat |
7786073 |
T |
|
| Q |
318 |
ttcaccggtaacctcaacagaaattgaatgatcagttcttgaggaaaatccatgctttgagcagcgttattct |
390 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
7786072 |
ttcaccggcaacctcaacagagtttgaaggatcagttcttgaggaagatccatgctttgagcaacgttattct |
7786000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 7771333 - 7770990
Alignment:
| Q |
18 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaac |
117 |
Q |
| |
|
||||||||||| | || ||||||||| | ||||||| || |||||| |||||||| || ||| | ||||||| ||||||||||| |||||||| ||| |
|
|
| T |
7771333 |
gatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttcaacaggaaaataagattctggaagcgaaa |
7771234 |
T |
|
| Q |
118 |
agttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagt |
217 |
Q |
| |
|
| |||| ||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||| ||| ||| |||||||||||||||| ||| |
|
|
| T |
7771233 |
aattaaggttcactgaagcaggatcatcgttaagaaatgcttcaaaatctatagatcgaatttcatgagattgagttgatatgcataaaaatctacaagt |
7771134 |
T |
|
| Q |
218 |
gtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagac |
317 |
Q |
| |
|
||| |||||| | |||||| |||||||||||| |||| |||||||||||||||| ||||||||| ||||||||| ||| |||||| || |||||| |
|
|
| T |
7771133 |
gtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagac |
7771034 |
T |
|
| Q |
318 |
ttcaccggtaacctcaacagaaattgaatgatcagttcttgagg |
361 |
Q |
| |
|
|||||||| ||||||| ||||| ||| || || ||||| ||||| |
|
|
| T |
7771033 |
ttcaccggcaacctcatcagaatttggattattagttcatgagg |
7770990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 7790018 - 7789675
Alignment:
| Q |
18 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaac |
117 |
Q |
| |
|
||||||||||| | || ||||||||| | ||||||| || |||||| |||||||| || ||| | |||| || ||||||||||| |||||||| ||| |
|
|
| T |
7790018 |
gatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttaaacaggaaaataagattctggaagcgaaa |
7789919 |
T |
|
| Q |
118 |
agttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagt |
217 |
Q |
| |
|
| |||| ||| |||||||||| |||||||||||||||| ||||||||||| |||| ||||||| ||||| ||| ||| || ||||||||||||| ||| |
|
|
| T |
7789918 |
aattaaggttcactgaagcaggatcatcgttaagaaatgcttcaaaatctatagatcaaatttcatgagattgagttgatatacataaaaatctacaagt |
7789819 |
T |
|
| Q |
218 |
gtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagac |
317 |
Q |
| |
|
||| ||||| | |||||| |||||||||||| |||| |||||||| ||||||| ||||||||| ||||||||| ||| |||||| || |||||| |
|
|
| T |
7789818 |
gtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagac |
7789719 |
T |
|
| Q |
318 |
ttcaccggtaacctcaacagaaattgaatgatcagttcttgagg |
361 |
Q |
| |
|
|||||||| ||||||| ||||| ||| || |||||||| ||||| |
|
|
| T |
7789718 |
ttcaccggcaacctcatcagaatttggattatcagttcatgagg |
7789675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 7237869 - 7238212
Alignment:
| Q |
18 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaac |
117 |
Q |
| |
|
||||||||||| | ||| ||||||||| | |||||| || |||||| ||||||||||| ||| ||||||||| ||||||||||| || | || || |
|
|
| T |
7237869 |
gatggattccatacgtagatgtttggaggttggtacaaaagtataaaccctctacatgaacctctgatttcaacaggaaaataagattccgaaaacaaaa |
7237968 |
T |
|
| Q |
118 |
agttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagt |
217 |
Q |
| |
|
| ||| ||| ||||| ||||| |||||||||||||||| ||| ||| || |||||||||||| |||||| || ||| ||||||||||| |||||||| |
|
|
| T |
7237969 |
aattacggttctgtgaaccaggatcatcgttaagaaatgcttcaggatcgattgatcgaatttcatgagataaaggtgatatgcataaaaacctacgagt |
7238068 |
T |
|
| Q |
218 |
gtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagac |
317 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||| || |||||| | |||||| |
|
|
| T |
7238069 |
atgcgttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagac |
7238168 |
T |
|
| Q |
318 |
ttcaccggtaacctcaacagaaattgaatgatcagttcttgagg |
361 |
Q |
| |
|
||||| || ||||||| ||||| ||| ||||| ||||| ||||| |
|
|
| T |
7238169 |
ttcactggcaacctcatcagaatttggatgattagttcatgagg |
7238212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 7877652 - 7877344
Alignment:
| Q |
18 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaac |
117 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||| ||||| || |||||| ||||| ||||| ||| | ||||||| |||||||||| | |||| ||| |
|
|
| T |
7877652 |
gatggattccatatgtagatgattggatgacagtacaaaagtataaaccctctgcatgaacctctaatttcaaccggaaaataaggtccacgaagtgaaa |
7877553 |
T |
|
| Q |
118 |
agttaaagttgggtgaagcaggagcatc---gttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacg |
214 |
Q |
| |
|
| |||| ||| ||||||||||| |||| |||||||||||| |||||| |||| |||||||||||| ||||||||| ||| ||||| | || |||| | |
|
|
| T |
7877552 |
aattaatgttcagtgaagcaggatcatcatcgttaagaaatgcttcaaaacctattgatcgaatttcatgagatagaggtgatatgcacataattctagg |
7877453 |
T |
|
| Q |
215 |
agtgtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagaga |
314 |
Q |
| |
|
||||||||||| | | ||||| ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| || ||| |
|
|
| T |
7877452 |
agtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataaga |
7877353 |
T |
|
| Q |
315 |
gacttcacc |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
7877352 |
gacttcacc |
7877344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 7773975 - 7774254
Alignment:
| Q |
18 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaac |
117 |
Q |
| |
|
||||||||||| ||||| |||||||| | ||| |||| || |||||| |||||||| || ||| | |||||| ||||||||||| |||||||| ||| |
|
|
| T |
7773975 |
gatggattccatatgtagatgtttgggtcacgatacaaaagtataaaccctctacacgaacctctaatttcagccggaaaataagattctggaagcgaaa |
7774074 |
T |
|
| Q |
118 |
agttaaagttgggtgaagcag---gagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacg |
214 |
Q |
| |
|
| |||| ||| |||||||| | |||||||||||||||| |||||| |||| |||||||||||| ||||||||| ||| ||||| | || |||| | |
|
|
| T |
7774075 |
aattaaggttcactgaagcagtatcatcatcgttaagaaatgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacataattctagg |
7774174 |
T |
|
| Q |
215 |
agtgtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaa |
294 |
Q |
| |
|
||||||||||| | | ||||| ||||||||||||||||| || ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
7774175 |
agtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaa |
7774254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 7822899 - 7822580
Alignment:
| Q |
17 |
agatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaa |
116 |
Q |
| |
|
|||||||||||| | ||| |||| |||| |||||| | ||||| ||| |||| |||||||||| | |||||||| ||||||||||| | ||||| | |
|
|
| T |
7822899 |
agatggattccataggtaaatgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaaggaaaataagatttaggaagcaag |
7822800 |
T |
|
| Q |
117 |
cagttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgag |
216 |
Q |
| |
|
| |||| ||| ||||||| | || |||| ||||| ||||||||| |||||| |||||||||||| |||||| || ||| | || || || |||||||| |
|
|
| T |
7822799 |
aaattaaggttcggtgaaggaagatcatcattaagccatgcatcaacatctatagatcgaatttcatgagataaagatgataagcctataattctacgag |
7822700 |
T |
|
| Q |
217 |
tgtgcgttgca-tggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagag |
315 |
Q |
| |
|
| || |||||| |||| || ||| || |||||||||||||| || ||||||||||||| |||||||||| | ||||||| ||||||||| || ||| |
|
|
| T |
7822699 |
tatgtgttgcagtggtgaa-ttgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagat |
7822601 |
T |
|
| Q |
316 |
acttcaccggtaacctcaaca |
336 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
7822600 |
acttcaccggcaacctcaaca |
7822580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 7800567 - 7800248
Alignment:
| Q |
17 |
agatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaa |
116 |
Q |
| |
|
|||||||||||| | ||| |||| |||| |||||| | ||||| ||| |||| |||||||||| | |||||||| ||||||||||| | ||||| | |
|
|
| T |
7800567 |
agatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaaggaaaataagatttaggaagcaag |
7800468 |
T |
|
| Q |
117 |
cagttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgag |
216 |
Q |
| |
|
| |||| ||| ||||||| | || |||| ||||| ||||||||| |||||| |||||||||||| |||||| || ||| | || || || |||||||| |
|
|
| T |
7800467 |
aaattaaggttcggtgaaggaagatcatcattaagccatgcatcaacatctatagatcgaatttcatgagataaagatgataagcctataattctacgag |
7800368 |
T |
|
| Q |
217 |
tgtgcgttgca-tggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagag |
315 |
Q |
| |
|
| || |||||| |||| || ||| || |||||||||||||| | |||||||||| || |||||||||| | ||||||| ||||||||| || ||| |
|
|
| T |
7800367 |
tatgtgttgcagtggtgaa-ttgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagat |
7800269 |
T |
|
| Q |
316 |
acttcaccggtaacctcaaca |
336 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
7800268 |
acttcaccggcaacctcaaca |
7800248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 7904961 - 7904657
Alignment:
| Q |
18 |
gatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaac |
117 |
Q |
| |
|
||||||||||| ||| | ||||||| | | ||||||| || |||||| |||||||| || ||| | ||||||| ||||||||||| || ||||| ||| |
|
|
| T |
7904961 |
gatggattccatatg-agatgtttgaacggcggtacaaaagtataaaccctctacacgaacctctaatttcaactggaaaataagattcgggaagcgaaa |
7904863 |
T |
|
| Q |
118 |
ag-ttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgag |
216 |
Q |
| |
|
| |||| ||| |||| || || ||| ||||||||||| ||||||| || ||| |||||||| |||||||| ||| ||||| | || |||| ||| |
|
|
| T |
7904862 |
aaattaaggttccatgaaccacgatgatcattaagaaatgcttcaaaatataaagattgaatttcatgagatagatatgatatgcacataattctaggag |
7904763 |
T |
|
| Q |
217 |
tgtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagaga |
316 |
Q |
| |
|
||| | ||| | | ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||| || ||||| |
|
|
| T |
7904762 |
tgttagctgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagaga |
7904663 |
T |
|
| Q |
317 |
cttcac |
322 |
Q |
| |
|
|||||| |
|
|
| T |
7904662 |
cttcac |
7904657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 7813410 - 7813091
Alignment:
| Q |
17 |
agatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaa |
116 |
Q |
| |
|
|||||||||||| | ||| |||| |||| |||||| | ||||| ||| |||| |||||||||| | |||||||| |||||||| || | ||||| | |
|
|
| T |
7813410 |
agatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaaggaaaatacgatttaggaagcaag |
7813311 |
T |
|
| Q |
117 |
cagttaaagttgggtgaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgag |
216 |
Q |
| |
|
| |||| ||| | ||||| | || |||| ||||| ||||||||| |||||| |||||||||||| |||||| || ||| | || || || ||||||| |
|
|
| T |
7813310 |
aaattaaggttcgctgaaggaagatcatcattaagccatgcatcaacatctatcgatcgaatttcatgagataaagatgataagcctataatcctacgag |
7813211 |
T |
|
| Q |
217 |
tgtgcgttgca-tggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagag |
315 |
Q |
| |
|
| || |||||| |||| || ||| || ||||| |||||||| || || |||||||||| |||||||||| | ||||||| ||||||||| || ||| |
|
|
| T |
7813210 |
tatgtgttgcagtggtgaa-ttgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagat |
7813112 |
T |
|
| Q |
316 |
acttcaccggtaacctcaaca |
336 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
7813111 |
acttcaccggcaacctcaaca |
7813091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 7908261 - 7907939
Alignment:
| Q |
17 |
agatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctgg-aaggga |
115 |
Q |
| |
|
|||||||||||| ||||| |||| |||| ||||||||| || |||||| ||||||||||| ||| | ||||||| ||||||| ||| || || ||| || |
|
|
| T |
7908261 |
agatggattccatatgtagatgtctggaggacggtacaaaagtataaaccctctacatgaacctctaatttcaaccggaaaatgaga-tcgggtaagcga |
7908163 |
T |
|
| Q |
116 |
acagttaaagttgggtgaagcaggagcatc---gttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatcta |
212 |
Q |
| |
|
| | ||| |||| ||||||||||| |||| |||||||||||| | ||||||||| |||||| ||||| ||||||||| ||| || | | || |||| |
|
|
| T |
7908162 |
aaaagtaatgttgagtgaagcaggatcatcatcgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattcta |
7908063 |
T |
|
| Q |
213 |
cgagt---gtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaacta |
309 |
Q |
| |
|
|| ||| ||||| | ||||||| ||||||||||||||||| || ||| ||||||||| |||||||||| |||||| || |||||||| | |
|
|
| T |
7908062 |
gaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtg |
7907963 |
T |
|
| Q |
310 |
agagagacttcaccggtaacctca |
333 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
7907962 |
taagagacttcaccggcaacctca |
7907939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 361
Target Start/End: Original strand, 45372428 - 45372549
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa |
339 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||| || |||||||||||||| ||||| | |||| |
|
|
| T |
45372428 |
aaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaa |
45372527 |
T |
|
| Q |
340 |
attgaatgatcagttcttgagg |
361 |
Q |
| |
|
|||||| |||| ||| ||||| |
|
|
| T |
45372528 |
tttgaatcatcaattcatgagg |
45372549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 48156798 - 48156888
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacc |
330 |
Q |
| |
|
||||| ||||||||||| |||| ||| ||||||| ||||||||| ||||||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
48156798 |
aaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc |
48156888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 48891124 - 48891020
Alignment:
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacct |
331 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||| |||| || ||||||||| ||||||||| ||| |||||| || |||||||| |||| |||||| |
|
|
| T |
48891124 |
taagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacct |
48891025 |
T |
|
| Q |
332 |
caaca |
336 |
Q |
| |
|
||||| |
|
|
| T |
48891024 |
caaca |
48891020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 49044600 - 49044699
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa |
339 |
Q |
| |
|
||||||||||||||||| || | | |||||||| |||||||||||||||||||| ||||||||| ||| |||||| |||| || ||||||| ||||| |
|
|
| T |
49044600 |
aaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaa |
49044699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 331
Target Start/End: Complemental strand, 48862959 - 48862857
Alignment:
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatc---agagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaa |
328 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |||||||| ||||||||| |||| |||| ||| |||||| | ||||||||||||||||| |
|
|
| T |
48862959 |
taagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaa |
48862860 |
T |
|
| Q |
329 |
cct |
331 |
Q |
| |
|
||| |
|
|
| T |
48862859 |
cct |
48862857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 45366582 - 45366683
Alignment:
| Q |
233 |
aagttggaaatgtgaatttgcaaattgaggatca---gagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac |
329 |
Q |
| |
|
|||||| ||||||||||||||||| || | |||| ||||||| ||||||||| ||||||||| |||||||||| || ||||||||||| |||||| |
|
|
| T |
45366582 |
aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac |
45366681 |
T |
|
| Q |
330 |
ct |
331 |
Q |
| |
|
|| |
|
|
| T |
45366682 |
ct |
45366683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 33134194 - 33134296
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatca---gagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca |
336 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| |||||| || |||||||| ||| |||||| | ||||||||||||||||| ||||||| |
|
|
| T |
33134194 |
aaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctcaaca |
33134293 |
T |
|
| Q |
337 |
gaa |
339 |
Q |
| |
|
||| |
|
|
| T |
33134294 |
gaa |
33134296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 345
Target Start/End: Original strand, 48170957 - 48171065
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatca---gagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca |
336 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||| || |||||| ||||||||| || |||||| || ||||||||||||| |||||||| || |
|
|
| T |
48170957 |
aaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagca |
48171056 |
T |
|
| Q |
337 |
gaaattgaa |
345 |
Q |
| |
|
||| ||||| |
|
|
| T |
48171057 |
gaatttgaa |
48171065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 48870249 - 48870144
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa |
339 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||| | ||||||| ||||||||| ||| |||||| | ||||| |||||||||| ||||| ||||| |
|
|
| T |
48870249 |
aaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaa |
48870150 |
T |
|
| Q |
340 |
attgaa |
345 |
Q |
| |
|
||||| |
|
|
| T |
48870149 |
tttgaa |
48870144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 48885935 - 48885830
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa |
339 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||| | ||||||| ||||||||| ||| |||||| | ||||| |||||||||| ||||| ||||| |
|
|
| T |
48885935 |
aaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaa |
48885836 |
T |
|
| Q |
340 |
attgaa |
345 |
Q |
| |
|
||||| |
|
|
| T |
48885835 |
tttgaa |
48885830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 49041509 - 49041574
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaa |
305 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| ||||||||| |||| |||| ||| |||||| |
|
|
| T |
49041509 |
aaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaa |
49041574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 49048996 - 49049053
Alignment:
| Q |
266 |
agagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcacc |
323 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| ||| |||||| ||||| |
|
|
| T |
49048996 |
agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc |
49049053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 57 - 363
Target Start/End: Complemental strand, 1812309 - 1812009
Alignment:
| Q |
57 |
aatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaacagttaaagttgggtgaagcaggagcatcgttaagaaatg |
156 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| ||||||||| | ||||| |||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
1812309 |
aatataaaatatctacatgaccctttaatttcaaaggaaaaataagactgaggaagcaaacaattaaagttcagtgaagcaggaacatcgttaagaaatg |
1812210 |
T |
|
| Q |
157 |
catcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatgtgaatttgcaaa |
256 |
Q |
| |
|
|||||||||| || | |||||||| ||||||| |||||||||||||||||||||| ||||||| |||| ||||||| ||||| |||||||||| |
|
|
| T |
1812209 |
catcaaaatcgataggtcgaatttgaggagattaagctgaaatgcataaaaatctaagagtgtgtgttg------taagttgaaaatgataatttgcaaa |
1812116 |
T |
|
| Q |
257 |
ttgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattgaatgatcagttct |
356 |
Q |
| |
|
|| |||| ||||||| |||||||||||||||||||| || ||| || || |||| ||||||| ||||||||||||| || ||||| ||||||||| |
|
|
| T |
1812115 |
gtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaacaaaatttgaacgatcagttcc |
1812016 |
T |
|
| Q |
357 |
tgaggaa |
363 |
Q |
| |
|
||||||| |
|
|
| T |
1812015 |
tgaggaa |
1812009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 1811766 - 1811921
Alignment:
| Q |
57 |
aatataaaacctctacatgaccctttgatttcaaagggaaaataagagtctggaagggaacagttaaagttgggtgaagcaggagcatcgttaagaaatg |
156 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||| | || || |||| |||||||| || |||||||| ||||||||||||||| |
|
|
| T |
1811766 |
aatataaaacctcaacatgaccctttaatttcaaagggaaaataagactgagggagcaaacaattaaagttccgtaaagcaggaacatcgttaagaaatg |
1811865 |
T |
|
| Q |
157 |
catcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatcta |
212 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
1811866 |
catcaaaatcgatagatcgaatttcaggagataaagttgaaatgtataaaaatcta |
1811921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 29712832 - 29712929
Alignment:
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac |
329 |
Q |
| |
|
||||||| |||||||||||||| || | || | |||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
29712832 |
taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac |
29712929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 29695867 - 29695794
Alignment:
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaa |
305 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| | ||| |||| ||| |||||||||||||||| ||| |||||| |
|
|
| T |
29695867 |
taagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaa |
29695794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 132 - 366
Target Start/End: Original strand, 11024800 - 11025034
Alignment:
| Q |
132 |
gaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggt |
231 |
Q |
| |
|
||||||| | |||||||||| |||| |||||||||||||||||| |||| ||| ||||| ||| ||| | | || |||| |||||| |||||| || |
|
|
| T |
11024800 |
gaagcagaatcatcgttaagcgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattctattagtgtgtgttgcagggg |
11024899 |
T |
|
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacct |
331 |
Q |
| |
|
||||| ||||| || |||||||| | | |||||||||||| || |||||| ||||||||| ||| |||||| || ||||||||||||||||||||| |
|
|
| T |
11024900 |
aaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacct |
11024999 |
T |
|
| Q |
332 |
caacagaaattgaatgatcagttcttgaggaaaat |
366 |
Q |
| |
|
||||| | ||| ||||||| ||| ||||| |||| |
|
|
| T |
11025000 |
caacatgatttgtatgatcaattcatgaggcaaat |
11025034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 336
Target Start/End: Original strand, 11015788 - 11015992
Alignment:
| Q |
132 |
gaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggt |
231 |
Q |
| |
|
||||||| | |||||||||| | || |||||||| ||||||||| ||||| ||| ||||| ||| ||| | | || |||| |||||| |||||| | |
|
|
| T |
11015788 |
gaagcagaatcatcgttaagcgacgcttcaaaatcaatggatcgagtttcaagagctagagttgacatgaacacaattctattagtgtgtgttgcagtgg |
11015887 |
T |
|
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacct |
331 |
Q |
| |
|
||||| ||||| || |||||||| | | |||||||||||| || ||| || ||||||||| ||| |||||| || ||||||||||||||||||||| |
|
|
| T |
11015888 |
aaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacct |
11015987 |
T |
|
| Q |
332 |
caaca |
336 |
Q |
| |
|
||||| |
|
|
| T |
11015988 |
caaca |
11015992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 361
Target Start/End: Original strand, 11006225 - 11006454
Alignment:
| Q |
132 |
gaagcaggagcatcgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggt |
231 |
Q |
| |
|
||||||| | |||||||||| |||| |||||||||||||||||||||||| ||| | ||| ||| ||| | | || |||| |||||| ||| | | |
|
|
| T |
11006225 |
gaagcagaatcatcgttaagcgatgcttcaaaatctatggatcgaatttcaagagctggagttgacatgaacacaattctattagtgtgtgttctagtgg |
11006324 |
T |
|
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacct |
331 |
Q |
| |
|
||| | ||||| || |||||||| |||||||||||||||| || |||||| ||||||||| ||||||||| || || ||||||||||| ||||| |
|
|
| T |
11006325 |
aaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacct |
11006424 |
T |
|
| Q |
332 |
caacagaaattgaatgatcagttcttgagg |
361 |
Q |
| |
|
||||| | ||| ||||||| ||| ||||| |
|
|
| T |
11006425 |
caacaagatttgtatgatcaattcatgagg |
11006454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 47452278 - 47452371
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctca |
333 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
47452278 |
aaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctca |
47452371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 349
Target Start/End: Complemental strand, 12195006 - 12194899
Alignment:
| Q |
242 |
atgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaat |
341 |
Q |
| |
|
||||||||||||||| || ||||||||||||| ||| |||||| ||||||||||||| |||||| ||| |||||||||||||| ||||||| ||| | | |
|
|
| T |
12195006 |
atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt |
12194907 |
T |
|
| Q |
342 |
tgaatgat |
349 |
Q |
| |
|
|||||||| |
|
|
| T |
12194906 |
tgaatgat |
12194899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 349
Target Start/End: Complemental strand, 12439434 - 12439327
Alignment:
| Q |
242 |
atgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaat |
341 |
Q |
| |
|
||||||||||||||| || ||||||||||||| ||| |||||| ||||||||||||| |||||| ||| |||||||||||||| ||||||| ||| | | |
|
|
| T |
12439434 |
atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt |
12439335 |
T |
|
| Q |
342 |
tgaatgat |
349 |
Q |
| |
|
|||||||| |
|
|
| T |
12439334 |
tgaatgat |
12439327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 349
Target Start/End: Complemental strand, 12200008 - 12199905
Alignment:
| Q |
246 |
gaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattgaa |
345 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| ||||||||| || |||||| ||| |||||||||||||| ||||||| ||| | ||||| |
|
|
| T |
12200008 |
gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa |
12199909 |
T |
|
| Q |
346 |
tgat |
349 |
Q |
| |
|
|||| |
|
|
| T |
12199908 |
tgat |
12199905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 349
Target Start/End: Complemental strand, 12444436 - 12444333
Alignment:
| Q |
246 |
gaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattgaa |
345 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| ||||||||| || |||||| ||| |||||||||||||| ||||||| ||| | ||||| |
|
|
| T |
12444436 |
gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa |
12444337 |
T |
|
| Q |
346 |
tgat |
349 |
Q |
| |
|
|||| |
|
|
| T |
12444336 |
tgat |
12444333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 332
Target Start/End: Complemental strand, 15348611 - 15348477
Alignment:
| Q |
198 |
atgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgc |
297 |
Q |
| |
|
||||| |||| |||||||||||| ||||| | ||| ||| |||||||||||||| || | |||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
15348611 |
atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc |
15348512 |
T |
|
| Q |
298 |
acttgaaaactaagagagacttcaccggtaacctc |
332 |
Q |
| |
|
| |||||| || ||||||||||||||||||||| |
|
|
| T |
15348511 |
atttgaaacgtataagagacttcaccggtaacctc |
15348477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 24309892 - 24309830
Alignment:
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaa |
294 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
24309892 |
taagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaa |
24309830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0508
Description:
Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 11977 - 11915
Alignment:
| Q |
232 |
taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaa |
294 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
11977 |
taagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaa |
11915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 361
Target Start/End: Complemental strand, 21015483 - 21015362
Alignment:
| Q |
240 |
aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa |
339 |
Q |
| |
|
||||||||| ||||||| || | | |||||||| ||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||||| || |
|
|
| T |
21015483 |
aaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaa |
21015384 |
T |
|
| Q |
340 |
attgaatgatcagttcttgagg |
361 |
Q |
| |
|
| | ||||||| ||||||||| |
|
|
| T |
21015383 |
ttaggatgatcaattcttgagg |
21015362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 14193139 - 14193199
Alignment:
| Q |
263 |
atcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcacc |
323 |
Q |
| |
|
|||| |||||| ||||| ||| |||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
14193139 |
atcaaagataagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcacc |
14193199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 21426100 - 21426041
Alignment:
| Q |
233 |
aagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttaca |
292 |
Q |
| |
|
|||||| ||||||||| ||| ||| ||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
21426100 |
aagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttaca |
21426041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University