View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_2 (Length: 665)
Name: NF9310_low_2
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 617; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 20 - 655
Target Start/End: Complemental strand, 46930405 - 46929769
Alignment:
| Q |
20 |
atatgcatagcagcaacaattgtataaaagccaggaaggtgaccgatttaccatacaaagagtagtgagtcataagcagctttatagacaaaaaacaagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930405 |
atatgcatagcagcaacaattgtataaaagccaggaaggtgaccgatttaccatacaaagagtagtgagtcataagcagctttatagacaaaaaacaagt |
46930306 |
T |
|
| Q |
120 |
aggccaaaaatcaaacacacacaagatatcatgcaaatcagtgatcaactctctagatt-aagtactgttgtccaaatcaacatattcaactaactacag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |
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| T |
46930305 |
aggccaaaaatcaaacacacacaagatatcatgcaaatcagtgatcaactctctagatttaagtgccgttgtccaaatcaacatattcaactaactacag |
46930206 |
T |
|
| Q |
219 |
aagatacctctttcactcaaacacttatctaagagttcttcttaacctcgctcgaacaaaaacatattcaccatctaaccataccaatgatcgggtcatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930205 |
aagatacctctttcactcaaacacttatctaagagttcttcttaacctcgctcgaacaaaaacatattcaccatctaaccataccaatgatcgggtcatc |
46930106 |
T |
|
| Q |
319 |
cagcacactaaaggatgctagaaagcacctcaattttcaacctaaaaaacacaaagaaaacgcctgaagccaattttttctcattatcttcagcaagaat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46930105 |
cagcacactaaaggatgctagaaagcacctcaattttcaacctaaaaaacacaaagaaaacgcctgaagccaattttttctcattatcttcagaaagaat |
46930006 |
T |
|
| Q |
419 |
attagtcttttgaatcatcagtcattttaatctcatgattcaattgttgcaggtattgccatctctcactcaatccatggtcctgtctttgagaatttca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46930005 |
attagtcttttgaatcatcagtcattttaatctcatgattcaattgttgcaggtattgccatctctcactcaatccatggtcctgtctttgagaatttca |
46929906 |
T |
|
| Q |
519 |
tgcagaggtttgggatcctggaaaccagctgacgagctttcacaatgtgaactttcaccggactttttcttctcttcttttatttctgcaagagtcttgg |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929905 |
tgcagaggtttgggatcctggaaaccagctgacgagctttcacaatgtgaactttcaccggactttttcttctcttcttttatttctgcaagagtcttgg |
46929806 |
T |
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| Q |
619 |
gccctgaaaatgcattggatttctgaatagatctctg |
655 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
46929805 |
gccctgaaaatgcattggatttctgaatagatctctg |
46929769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 20 - 655
Target Start/End: Complemental strand, 47167623 - 47166974
Alignment:
| Q |
20 |
atatgcatagcagcaacaattgtataaaagccaggaaggtgaccgatttaccatacaaagagtagtgagtcataagcagctttatagacaaaaaacaagt |
119 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167623 |
atatgcatagcagcaacagttgtataaaagccaggaaggtgaccgatttaccatacaaagagtagtgagtcataagcagctttatagacaaaaaacaagt |
47167524 |
T |
|
| Q |
120 |
aggccaaaaatcaaacacacacaagatatcatgcaaatcagtgatcaactctctaga-ttaagtactgttgtccaaatcaacatattcaactaactacag |
218 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
47167523 |
agggcaaaaatcaaacacacacaagatatcatgcaaatcagtgatcaactctctagatttaagtgtcgttgtccaaatcaacatattcaactaactacag |
47167424 |
T |
|
| Q |
219 |
aagatacctctttcactcaaaca---cttatctaagagttcttcttaacctcgctcgaacaaaaacatattcaccatctaaccataccaatgatcgggtc |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
47167423 |
aagatacctctttcactcaaacactgcttatctaagagttcttcttaacctcgctcgaacaagaacatattcaccatctaaccataccaatgatagggtc |
47167324 |
T |
|
| Q |
316 |
a------tccagcacactaaaggatgctagaaagcacctcaattttcaacctaaaaaaca--caaagaaaacgcctgaagcc--aattttttctcattat |
405 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |||||||| || |||||||||| |
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| T |
47167323 |
atccaggtccagcacactaaaggatgctagaaagcacctcaattttcaaccaaaaaaaaaagaaaagaaaacggctgaagccaaaaaaaattctcattat |
47167224 |
T |
|
| Q |
406 |
cttcagcaagaatattagtcttttgaatcatcagtcattttaatctcatgattcaattgttgcaggtattgccatctctcactcaatccatggtcctgtc |
505 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167223 |
cttcagcaaaaatattagtcttctgaatcatcagtcattttaatctcatgattcaattgttgcaggtattgccatctctcactcaatccatggtcctgtc |
47167124 |
T |
|
| Q |
506 |
tttgagaatttcatgcagaggtttgggatcctggaaaccagctgacgagctttcacaatgtgaactttcaccggactttttcttctcttcttttatttct |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167123 |
tttgagaatttcatgcagaggtttgggatcctggaaaccagctgacgagctttcacaatgtgaactttcaccggactttttcttctcttcttttatttct |
47167024 |
T |
|
| Q |
606 |
gcaagagtcttgggccctgaaaatgcattggatttctgaatagatctctg |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47167023 |
gcaagagtcttgggccctgaaaatgcattggatttctgaatagatctctg |
47166974 |
T |
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