View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_21 (Length: 392)
Name: NF9310_low_21
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 40891585 - 40891919
Alignment:
| Q |
13 |
agcagagaagagtttcaattagaaataagagtacaaaggatactcaacccatacaactcgaaaagggtttatatgaagagcaatgctagctagcaggact |
112 |
Q |
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| T |
40891585 |
agcagagaagagtttcaattagaaataagagtacaaaggatactcaacccatacaactcgaagagggtttatatgaagagcaatgttagctagcaggatt |
40891684 |
T |
|
| Q |
113 |
caataacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatgggggag-agagaataaaagcaatgttgcacattcttcatccaagg |
211 |
Q |
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| T |
40891685 |
caataacccacgacaacaaacgacgttgaaatcaacggatagcatacaatacatggggggggagagaataaaagcaatgttgcacattcttcatccaagg |
40891784 |
T |
|
| Q |
212 |
gttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtgccacaaacaattttcttataatgaattctgtgggaaaaacaatgtggaagatttct |
311 |
Q |
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| T |
40891785 |
gttatattggtgtcgtgcgttttcgtgcttgtattgttgtcgtgccacaaacaattttcttataatgaattctgtgggaaaaacaatgtggaagatttct |
40891884 |
T |
|
| Q |
312 |
caatttttcccctgtatatcgcacctccaaaagtc |
346 |
Q |
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| T |
40891885 |
caatttttcccctgtatatcgcacccccaaaagtc |
40891919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 3450207 - 3450073
Alignment:
| Q |
124 |
gacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatccaagggttatattggtg |
223 |
Q |
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| T |
3450207 |
gacaacacacgacgttggaatcaacggatagcatacactacatgggggagagagaataaaagcaatgctgcacattattcatccaagggttatattagtg |
3450108 |
T |
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| Q |
224 |
tcgtgtgttttcgtgcttgtattggtgtcgtgcca |
258 |
Q |
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| T |
3450107 |
tcgtgcgttttcgtgtttgtattggtgtcgtgcca |
3450073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 34254516 - 34254388
Alignment:
| Q |
131 |
cacgacgttgaaatcaatggatagcatacaattcatgggggagagaga-ataaaagcaatgttgcacattcttcatccaagggttatattggtgtcgtgt |
229 |
Q |
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| T |
34254516 |
cacgacgttggaatcaacgggtaggatacaatacacgggggagagagagaaaaaagcaatgctgcacatttttcatccaagggctatatcattgtcgtgt |
34254417 |
T |
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| Q |
230 |
gttttcgtgcttgtattggtgtcgtgcca |
258 |
Q |
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|| ||| |||||| |||||||||||||| |
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| T |
34254416 |
gtattcaggcttgtgttggtgtcgtgcca |
34254388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 255
Target Start/End: Complemental strand, 26715392 - 26715224
Alignment:
| Q |
88 |
aagagcaatgctagctagcaggactcaa-taacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatggg-ggagagagaataaaag |
185 |
Q |
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||||||| ||||| ||||| ||||||| | |||||||||||||||||| || |||| | | || ||||||||| |||||| ||||||||||| ||| |
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| T |
26715392 |
aagagcagtgctatttagcacgactcaaatgacccacgacaacacacgagattcgaatcgacgaatggcatacaatacatgggaggagagagaattaaaa |
26715293 |
T |
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| Q |
186 |
caatgttgcacattcttcatccaagggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtg |
255 |
Q |
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| T |
26715292 |
cagtgctgcaca-tcattatccaagggttatgcgtgtgtcgtgcgttctcgtgcatgtaattgtgtcgtg |
26715224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 258
Target Start/End: Complemental strand, 10505648 - 10505507
Alignment:
| Q |
109 |
gactcaataacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatcca |
208 |
Q |
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|||||||| ||| |||||||||||| | |||| ||||||||||||||||||||| ||| |||| | |||||||||||| ||||||| |||||||| |
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| T |
10505648 |
gactcaatgaccaacgacaacacaccatgttggaatcaatggatagcatacaatacattgggg-----ggataaaagcaatgccgcacattattcatcca |
10505554 |
T |
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| Q |
209 |
agggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtgcca |
258 |
Q |
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| T |
10505553 |
aggattatatcaatgtcg---catttcgtgtttgtattggtgtcgtgcca |
10505507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 633816 - 633924
Alignment:
| Q |
150 |
gatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatccaa-gggttatattggtgtcgtgtgttttcgtgcttgtattgg |
248 |
Q |
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|||| |||||||| | |||||||||||||||||| ||| ||| ||||| ||||||||| ||||| | |||||||||| ||||||||||||| |||| |
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| T |
633816 |
gatatcatacaatatacgggggagagagaataaaaaaaatcttgtacattattcatccaatgggtttaactggtgtcgtgcgttttcgtgcttg-attga |
633914 |
T |
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| Q |
249 |
tgtcgtgcca |
258 |
Q |
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|||||||||| |
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| T |
633915 |
tgtcgtgcca |
633924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 30622053 - 30622097
Alignment:
| Q |
15 |
cagagaagagtttcaattagaaataagagtacaaaggatactcaa |
59 |
Q |
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| T |
30622053 |
cagagaagagttccaattcgaaataagagtacaaagaatactcaa |
30622097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 39606414 - 39606501
Alignment:
| Q |
118 |
acccacgacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatc |
206 |
Q |
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| T |
39606414 |
acccatgacaacacacaatttcgaaatcgacggctagcatacaatacatggggg-gagaaaataaaagcaatgctgcacattattcatc |
39606501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 255
Target Start/End: Original strand, 9522212 - 9522378
Alignment:
| Q |
90 |
gagcaatgctagctagcaggactcaa-taacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatggg-ggagagagaataaaagca |
187 |
Q |
| |
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| T |
9522212 |
gagcagtgctatttagcacgactcaaatgacccacgacaacacacgagattcaaatcgtcggatggcatacaatacatgggaggagagagaattaaagca |
9522311 |
T |
|
| Q |
188 |
atgttgcacattcttcatccaagggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtg |
255 |
Q |
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| T |
9522312 |
gtgctgcaca-tcataatccaaggtttatgcgcgtgtcgtgcgttctcgtgcatgtaattgtgtcgtg |
9522378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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