View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_22 (Length: 388)
Name: NF9310_low_22
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 189 - 368
Target Start/End: Complemental strand, 16837127 - 16836948
Alignment:
| Q |
189 |
aaatggtcatccaacaagaaacattgggccttttgccaatggaagatcattccgaaagaggactcttggaggagatgctcaatatcttctcaattatttt |
288 |
Q |
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| T |
16837127 |
aaatggtcatccaacaagaaacattgggccttttgccaatggaagatcattccgaaagaggactcttggaggagatgctcaatatcttctcaattatttt |
16837028 |
T |
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| Q |
289 |
cagaagatgcagtgtgaaaaccatggcttttattatgcaatacagctcgatgataaaaaccacttgaccaatgtattctg |
368 |
Q |
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| T |
16837027 |
cagaagatgcagtgtgaaaaccatggcttttattatgcaatacagctcgatgataaaaaccacttgaccaatgtattctg |
16836948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 16837334 - 16837161
Alignment:
| Q |
15 |
atattggacagtgacaaagtttgttgaggaccacagccattctctagcttcctctaaaacggagaaacacagtcggccgcgtaggcattttgtaggttct |
114 |
Q |
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| T |
16837334 |
atattggacagtgacaaagtttgttgaggaccacagccattctctagcttcctctaaaacggagaaacacagtcggccgcgtaggcattttgtaggttct |
16837235 |
T |
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| Q |
115 |
aaaaggaacgttggagagacatccaatgccagtaatgattcctatgtttctatgaagggccaacatggcgaacc |
188 |
Q |
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| T |
16837234 |
aaaaggaacgttggagagacatccaatgccagtaatgattcctatgtttctatgaagggcaaacatggcgaacc |
16837161 |
T |
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