View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9310_low_23 (Length: 387)
Name: NF9310_low_23
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 149 - 382
Target Start/End: Original strand, 36427473 - 36427706
Alignment:
| Q |
149 |
tttcccatgacaatatttactctttttgtttacnnnnnnnnaggtgtactcttattgtttacttattcatttcaaaaaataggtaaaataattagaggta |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36427473 |
tttcccatgacaatatttactctttttgtttacttttttttaggtgtactcttattgtttacttattcatttcaaaaaataggtaaaataattagaggta |
36427572 |
T |
|
| Q |
249 |
caaatttgacgaaagagtgtattttgaaaaaggataccaaaatttcaaaacagttcaatatttactcttactaaaacatgtaagacacgtatttccaaga |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36427573 |
caaatttgacgaaagagtgtattttgaaaaaggataccaaaatttcaaaacagttcaatattaactcttactaaaacatgtaagacacgtatttccaaga |
36427672 |
T |
|
| Q |
349 |
aagacatcaaagttaaggtactccctatgctact |
382 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
36427673 |
aagacatcaaagttaaggtactccctatgttact |
36427706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 36426944 - 36427082
Alignment:
| Q |
12 |
aaaaataaataaagtttatatttatagctagctgcattgtgtgtggagtgcacttgatgtatcaaatcatagtgactaaaaggaagaaggatttaaagag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36426944 |
aaaaataaataaagtttatatttatagc----tgcattgtgtgtggagtgcacttgatgtatcaaatcatagtgactaaaaggaagaaggatttaaagag |
36427039 |
T |
|
| Q |
112 |
atgtaaggaccagaagagggaatattcaaaagttgtttttccc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36427040 |
atgtaaggaccagaagagggaatattcaaaagttgtttttccc |
36427082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 36430121 - 36430172
Alignment:
| Q |
57 |
gagtgcacttgatgtatcaaatcatagtgactaaaaggaagaaggatttaaa |
108 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
36430121 |
gagtgcatttcatgtatcaaatcatagtgactaaaagaaggagggatttaaa |
36430172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University