View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_24 (Length: 368)
Name: NF9310_low_24
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 6577611 - 6577278
Alignment:
| Q |
18 |
aaaaccaacctacagaaactagtgataattcaattaaaggcccaacaccgtttatgttcgaaactgaagttgatcgtatcttttctactcctttaggtgc |
117 |
Q |
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| T |
6577611 |
aaaaccaagctacagaaactagtgataattcaattaaaggcccaacaccgtttatgtttgaaactgaagttgatcgtatcttttctactcctttaggtgc |
6577512 |
T |
|
| Q |
118 |
ttgaaagttgaataatatgtttctacatgcattcatatatagtttttgttgtgtgtgtagacatgggattcattgataatgacgtaaatcaaaattcatc |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6577511 |
ttgaaagttg---aatatgtttctacatgcattcatatatagtttttgttgtgtgtgtagacatgggattcattgataatgacgtaaatcaaaattcatc |
6577415 |
T |
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| Q |
218 |
cgtgacnnnnnnnnnnncaacctttgatagggtgtatttaatccaaaacccactcatgcatatgcatacaatttcatattatatgcttcatgcactccat |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6577414 |
cgtgac-aaaaaaaaaacaacctttgatagggtgtatttaatccaaaacccactcatgcatatgcatacaatttcatattatatgcttcatgcactccat |
6577316 |
T |
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| Q |
318 |
cgaagtacactttactttccaaatacatggaactatct |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6577315 |
cgaagtacactttactttccaaatacatggaactatct |
6577278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 34243826 - 34243927
Alignment:
| Q |
18 |
aaaaccaacctacagaaactagtgataattcaattaaaggcccaacaccgtttatgttcgaaactgaagttgatcgtatcttttctactcctttaggtgc |
117 |
Q |
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|||| ||||||||||| |||| || | ||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| || |||||||| |
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| T |
34243826 |
aaaatcaacctacagagactaatgttggttcaattcgtggcccgacaccatttatgtttgaaactgaagttgatcgtatcttttctacgccattaggtgc |
34243925 |
T |
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| Q |
118 |
tt |
119 |
Q |
| |
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|| |
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| T |
34243926 |
tt |
34243927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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