View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_27 (Length: 344)
Name: NF9310_low_27
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 37 - 290
Target Start/End: Original strand, 43899849 - 43900105
Alignment:
| Q |
37 |
gcccatacaggtttgattcaaaatctggattgaagaatttttatgcgtgaaccttcatcaagaactgaatcttcatcaaaatccatcattccgaatctgg |
136 |
Q |
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| T |
43899849 |
gcccatacaggtttgattcaaaatctggattgaagaatttttatgcgtaaaccttcatcaagaactgaatctttatcaaaatccatcatttcgaatctgg |
43899948 |
T |
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| Q |
137 |
atctgccataactctctcggatccagcgctccaagaatccttgtatgcagtagcgattttcggaatcctcctttgagattttcggattttattactttgt |
236 |
Q |
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| T |
43899949 |
atctgccatagctctctcggatccagcgctccaagaatccttgtatgcagtagcgattttcggaatcctcctttgagattttcggattttattactttgt |
43900048 |
T |
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| Q |
237 |
---caacaatattttgatgcttacaggggccgagtggcgttggggcgtttttgacag |
290 |
Q |
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| T |
43900049 |
caacaacaatattttgattcttacaagggccgagtggcgttggggcatttttgacag |
43900105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 37 - 309
Target Start/End: Original strand, 18905262 - 18905554
Alignment:
| Q |
37 |
gcccatacaggtttgattcaaaatctggattgaagaatttttatgcgtgaaccttcatcaagaactgaatcttcatcaaaatccatcatt---------- |
126 |
Q |
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| T |
18905262 |
gcccatacagatttgattcaaaatatggattgaagaaattttatgcgtgaaccttcatcaagaactgaatcttcatcaaactccatcatttcgaatctga |
18905361 |
T |
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| Q |
127 |
-------ccgaatctggatctgccataactctctcggatccagcgctccaagaatccttgtatgcagtagcgattttcggaatcctcctttgagattttc |
219 |
Q |
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| T |
18905362 |
attagatccgaatctggatatgccatagctctctcggacccagcgctccaagaatccttgtatgcagtagcgattttcggaatcctcctttgagattttc |
18905461 |
T |
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| Q |
220 |
ggattttattactttgt---caacaatattttgatgcttacaggggccgagtggcgttggggcgtttttgacaggatctttgtaaggacctct |
309 |
Q |
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| T |
18905462 |
ggattttattactttgtcaacaacaatattttgattcttacaggggccgagtggcgttggggcgtttttgacagtttctttggaaggacctct |
18905554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 11938473 - 11938374
Alignment:
| Q |
39 |
ccatacaggtttgattcaaaatctggattgaagaatttttatgcgtgaaccttcatcaagaactgaatcttcatcaaaatccatcattccgaatctggat |
138 |
Q |
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||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11938473 |
ccatacaagtttgattcaaaatatggattgaagaatttgtacgcgtgaaccttcatcaagaactgaatcttcatcaaaatccatcattccgtatctggat |
11938374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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