View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_29 (Length: 331)
Name: NF9310_low_29
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 33144755 - 33144491
Alignment:
| Q |
21 |
ttagtataaaaattaatatgaagtttgtgtactgggcaggctcaaccacttttgagtcatgcattggaggaggatggaaactttgcagaattggtggatc |
120 |
Q |
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| T |
33144755 |
ttagtataaaaattaatatgaagtttgtgtactggacaggctcgaccacttttgagtcgtgcattggaggaggatggaaactttgcagaattggtggatc |
33144656 |
T |
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| Q |
121 |
catttttggaaggaaattacgatcatcaagaaatgataagattggcagcttgtgctgctagtagcattcgtcattctgctaaaaagcgttcaaaaatgag |
220 |
Q |
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| T |
33144655 |
catttttggaaggaaattacgatcatcaagaaatgataagattggcagcttgtgctgctagtagcattcgtcattctgctaaaaagcgttcaaaaatgag |
33144556 |
T |
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| Q |
221 |
ccaggtaaaataacatgatgcttaatcattaacaatttataaagatcaagttaattgatgtcata |
285 |
Q |
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| T |
33144555 |
ccaggtaaaataacatgatgcttaatcattaacaatttataaagatcaagttaattgatgtcata |
33144491 |
T |
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Back To:
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 7564733 - 7564904
Alignment:
| Q |
56 |
gcaggctcaaccacttttgagtcatgcattggaggaggatggaaactttgcagaattggtggatccatttttggaaggaaattacgatcatcaagaaatg |
155 |
Q |
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|||||||| |||||| |||| || || | | |||||||||||||||||| || |||||||||||||||||||||||||| || |||| ||||||| | |
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| T |
7564733 |
gcaggctcgaccactattgactcgtggactcgaggaggatggaaactttagcgagttggtggatccatttttggaaggaaactatgatcctcaagaactc |
7564832 |
T |
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| Q |
156 |
ataagattggcagcttgtgctgctagtagcattcgtcattctgctaaaaagcgttcaaaaatgagccaggta |
227 |
Q |
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| T |
7564833 |
gctagaatggcagcttgcgctgctgctagcattcgtcactctgccaggaagcgttctaaaatgagtcaggta |
7564904 |
T |
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