View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9310_low_31 (Length: 323)
Name: NF9310_low_31
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 15927321 - 15927173
Alignment:
| Q |
18 |
gtattttaccattgtgttattttgtaacgaatacactttgtggtacttagcatgtaagtctctacaattaggtctcactttgattttattgcctgtaaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15927321 |
gtattttaccattgtgttattttgtaacgaatacactttgtggtacttagcatgtaagtctctacaattaggtctcacttttattttattgcctgtaaaa |
15927222 |
T |
|
| Q |
118 |
caaattctttcaattaacccttgcaatttcataacacttttaacttgtt |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15927221 |
caaattctttcaattaacccttgcaatttcataacacttttaacttgtt |
15927173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 15054287 - 15054239
Alignment:
| Q |
115 |
aaacaaattctttcaattaacccttgcaatttcataacacttttaactt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
15054287 |
aaacaaattctttcaattaacccttgcaatttcaaaacacttataactt |
15054239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 15927112 - 15927079
Alignment:
| Q |
254 |
gctcatatgaagaaggcaacacaatgacaatatg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15927112 |
gctcatatgaagaaggcaacacaatgacaatatg |
15927079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University