View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_39 (Length: 294)
Name: NF9310_low_39
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 30605744 - 30605478
Alignment:
| Q |
18 |
acaagatgggcacctcatcattgcataggatagcatgatctcactgagattgagattgagggtgaaccaaagggccacggtttccaccttgctttaattc |
117 |
Q |
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| T |
30605744 |
acaagatgggcacctcatcattgcataggatagcatgatctcactgagattgagattgagggtgaaccaaagggccacggtttccaccttgctttaattc |
30605645 |
T |
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| Q |
118 |
agatacttcgcgttgaggaaggccaaaaacatttgcaagaacctctgcaggagtggccctgaacacctgctttacattgttaacagaagctctgtcattt |
217 |
Q |
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| T |
30605644 |
agatacttcgcgttgaggaaggccaaaaacatttgcaagaacctctgcaggagtggccctgaacacctactttacattgttaacagaagctccgtcattt |
30605545 |
T |
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| Q |
218 |
gtcttgaacactatgtactcaaatgcttcttcctctccagcttgctgcgccaccacaaagttctgtg |
284 |
Q |
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| T |
30605544 |
gtcttgaacactatgtactcaaatgcttcttcctctccagcttgctgcaccaccacaaagttctgtg |
30605478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 284
Target Start/End: Original strand, 32252670 - 32252887
Alignment:
| Q |
67 |
ttgagattgagggtgaaccaaagggccacggtttccaccttgctttaattcagatacttcgcgttgaggaaggccaaaaacatttgcaagaacctctgca |
166 |
Q |
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| T |
32252670 |
ttgagattgagggtgaactagaggaccacggtttccactgaacttgatttgagtgacatcacgtggacgaaggccaaaaacatttgaaagaacctcagca |
32252769 |
T |
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| Q |
167 |
ggagtggccctgaacacctgctttacattgttaacagaagctctgtcatttgtcttgaacactatgtactcaaatgcttcttcctctccagcttgctgcg |
266 |
Q |
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| T |
32252770 |
ggggtggccctgaatacctgcttcacatggctaacagcagctaagtcgtttgtcttgaacaccacatactcaaatgcttcttcatttccggcttgttgcg |
32252869 |
T |
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| Q |
267 |
ccaccacaaagttctgtg |
284 |
Q |
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| T |
32252870 |
ccaccacaaagttttgtg |
32252887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 284
Target Start/End: Original strand, 32242083 - 32242307
Alignment:
| Q |
60 |
actgagattgagattgagggtgaaccaaagggccacggtttccaccttgctttaattcagatacttcgcgttgaggaaggccaaaaacatttgcaagaac |
159 |
Q |
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| T |
32242083 |
actgagactgtgattgagggtgaaccaaaggaccacggtttccactgaacttgatttgagtgacatcacgtggacgaaggccgaaagcattttcaagaac |
32242182 |
T |
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| Q |
160 |
ctctgcaggagtggccctgaacacctgctttacattgttaacagaagctctgtcatttgtcttgaacactatgtactcaaatgcttcttcctctccagct |
259 |
Q |
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||| ||| |||||||||||||||||||| |||| |||||||| |||| ||| ||||||||||| || | ||||| ||||||||||| | || ||| |
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| T |
32242183 |
ctcacgaggggtggccctgaacacctgcttcacatggttaacagcagctaggtcgtttgtcttgaaaaccacatactctaatgcttcttcgttccctgct |
32242282 |
T |
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| Q |
260 |
tgctgcgccaccacaaagttctgtg |
284 |
Q |
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|| | ||||||||| ||||| |||| |
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| T |
32242283 |
tgttccgccaccacgaagttttgtg |
32242307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 284
Target Start/End: Original strand, 32247920 - 32248137
Alignment:
| Q |
67 |
ttgagattgagggtgaaccaaagggccacggtttccaccttgctttaattcagatacttcgcgttgaggaaggccaaaaacatttgcaagaacctctgca |
166 |
Q |
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|||||||||||| ||||||||||| ||||||||||||| ||| | || || || || ||| || ||||||| ||| ||||| |||||||||| | |
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| T |
32247920 |
ttgagattgaggatgaaccaaaggaccacggtttccactgaacttgatttgagtgacatcacgtggacgaaggccgaaagcattttcaagaacctcgcga |
32248019 |
T |
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| Q |
167 |
ggagtggccctgaacacctgctttacattgttaacagaagctctgtcatttgtcttgaacactatgtactcaaatgcttcttcctctccagcttgctgcg |
266 |
Q |
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| T |
32248020 |
ggggtggccctgaacacctgcttcacatggttaacagcagctaggtcgtttgtcttgaaaaccacatactctaatgcttcttcgttccctgcttgttccg |
32248119 |
T |
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| Q |
267 |
ccaccacaaagttctgtg |
284 |
Q |
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||||||| ||||| |||| |
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| T |
32248120 |
ccaccacgaagttttgtg |
32248137 |
T |
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