View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_44 (Length: 269)
Name: NF9310_low_44
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 31362758 - 31362514
Alignment:
| Q |
18 |
caaatatcatgtattattttttgctcatgtagaaattctgtatatatatttaatgacatgtgtgtgtagtttagaaatcttttcagtgcttagctgatac |
117 |
Q |
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| T |
31362758 |
caaatatcatgtattattttttgctcatgtagaaattctgtatctatatttgatgacatgtgtgtgtagtttagaagttttttcagtacttatctgatag |
31362659 |
T |
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| Q |
118 |
ctctgaattgtatatatat--agagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaa |
215 |
Q |
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|||| |||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31362658 |
ctctcaattgtatgtatatttagagaaagctcttgaagttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaa |
31362559 |
T |
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| Q |
216 |
cctaactggtttacacctcccataccgaaaatcgtagagaataat |
260 |
Q |
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| T |
31362558 |
cctaactggtttacgcctcccataccgaaaatcgtagagaataat |
31362514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 31258001 - 31257792
Alignment:
| Q |
19 |
aaatatcatgtattattttttgctcatgtagaaattctgtatatatatttaatgacatgtgtgtgtagtttagaaatcttttcagtgcttagctgatacc |
118 |
Q |
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| T |
31258001 |
aaatatcatgtattttcttttgctgatatagaaattctgtatatatgtttgatgacatgtttgtaaaat--agaaat-ttttcagtacttagctgatagc |
31257905 |
T |
|
| Q |
119 |
tctgaattgtatatatatagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacct |
218 |
Q |
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| T |
31257904 |
tctcaattgtatattta--gagaaagttcttgaagttatagctaaatcacttggtaagaaagattggaacttcgacactgatccatgcagcaacaaacct |
31257807 |
T |
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| Q |
219 |
aactggtttacacct |
233 |
Q |
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|||||| ||||||| |
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| T |
31257806 |
aactgggctacacct |
31257792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 31416417 - 31416538
Alignment:
| Q |
135 |
atagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactggtttacacctc |
234 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
31416417 |
atagagaaagctcttgaagttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgggttacgccta |
31416516 |
T |
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| Q |
235 |
ccataccgaaaatcgtagagaa |
256 |
Q |
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| T |
31416517 |
cgataccgaatgtcgtagagaa |
31416538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 31310257 - 31310093
Alignment:
| Q |
58 |
tatatatatttaatgacatgtgtgtgtagtttagaaatcttttcagtgcttagctgatacctctgaattgtatatatatagagaaagctcttcacgttat |
157 |
Q |
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||||||||||| ||||||||||||||||||||| || |||||||| |||| |||||| |||| |||| ||||| || | |||||||||| | | ||| |
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| T |
31310257 |
tatatatatttgatgacatgtgtgtgtagtttaaaatatttttcagtacttaactgatagctctaaattttatattta--gtgaaagctcttgaagatat |
31310160 |
T |
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| Q |
158 |
agctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgg |
224 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||| || |||||||| |
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| T |
31310159 |
agctaaatcacttggtaagacggattggaacttcagcattgatccatgcagcaacaattctaactgg |
31310093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 31283690 - 31283569
Alignment:
| Q |
107 |
ttagctgatacctctgaattgtatatatatagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgc |
206 |
Q |
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|||||||||| |||| |||||||||| || |||||||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
31283690 |
ttagctgatagctctcaattgtatattta--gagaaagctcttgaaagtatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgc |
31283593 |
T |
|
| Q |
207 |
agcaataaacctaactggtttaca |
230 |
Q |
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||||| |||||||| ||||||||| |
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| T |
31283592 |
agcaacaaacctaaatggtttaca |
31283569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 31376837 - 31376716
Alignment:
| Q |
107 |
ttagctgatacctctgaattgtatatatatagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgc |
206 |
Q |
| |
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|||||||||| |||| |||||||||| || |||||||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
31376837 |
ttagctgatagctctcaattgtatattta--gagaaagctcttgaaagtatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgc |
31376740 |
T |
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| Q |
207 |
agcaataaacctaactggtttaca |
230 |
Q |
| |
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||||| ||||||||||||| |||| |
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| T |
31376739 |
agcaacaaacctaactggtctaca |
31376716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 31295088 - 31294994
Alignment:
| Q |
130 |
tatatatagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgg |
224 |
Q |
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||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
31295088 |
tatatgtagagaaagctcttgaagttatagctaaatcacttggtaagaatgattggaacttcgacattgatccatgtagcaaccaacctaactgg |
31294994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 31389130 - 31389006
Alignment:
| Q |
108 |
tagctgatacctctgaattgtatatatat--agagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatg |
205 |
Q |
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||||||||| |||| |||||||| ||||| ||||||||||||| | | ||||||| |||||||||||||||| ||||||||||| ||||| ||||| || |
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| T |
31389130 |
tagctgatagctctcaattgtatgtatatttagagaaagctcttgaagatatagctgaatcacttggtaagaaagattggaacttcgacatcgatccttg |
31389031 |
T |
|
| Q |
206 |
cagcaataaacctaactggtttaca |
230 |
Q |
| |
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|||||| |||||| |||||||||| |
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| T |
31389030 |
cagcaaccaacctatctggtttaca |
31389006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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