View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9310_low_55 (Length: 258)

Name: NF9310_low_55
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9310_low_55
NF9310_low_55
[»] chr4 (4 HSPs)
chr4 (12-161)||(25814852-25815001)
chr4 (12-82)||(31252143-31252216)
chr4 (200-242)||(5281238-5281280)
chr4 (198-242)||(5418618-5418662)
[»] chr5 (5 HSPs)
chr5 (12-164)||(23052625-23052779)
chr5 (200-242)||(43446854-43446896)
chr5 (200-242)||(26300106-26300148)
chr5 (200-242)||(26300214-26300256)
chr5 (198-234)||(6763690-6763726)
[»] chr6 (2 HSPs)
chr6 (162-202)||(27772195-27772235)
chr6 (200-241)||(14310516-14310557)
[»] chr8 (5 HSPs)
chr8 (199-242)||(1739668-1739711)
chr8 (200-242)||(13211234-13211276)
chr8 (200-241)||(15285648-15285689)
chr8 (200-241)||(15466017-15466058)
chr8 (198-242)||(9056124-9056168)
[»] chr7 (2 HSPs)
chr7 (199-242)||(1706827-1706870)
chr7 (198-242)||(12171235-12171279)
[»] chr3 (2 HSPs)
chr3 (199-242)||(52168277-52168320)
chr3 (209-242)||(22153162-22153195)
[»] chr1 (4 HSPs)
chr1 (199-242)||(3384217-3384260)
chr1 (200-242)||(14418160-14418202)
chr1 (200-241)||(15439966-15440007)
chr1 (198-242)||(4060274-4060318)
[»] scaffold0039 (1 HSPs)
scaffold0039 (200-242)||(54383-54425)
[»] scaffold0024 (1 HSPs)
scaffold0024 (200-242)||(120248-120290)
[»] chr2 (2 HSPs)
chr2 (200-242)||(43426731-43426773)
chr2 (198-242)||(9431190-9431234)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 25815001 - 25814852
Alignment:
Q  12 agagatggatttacttttctatatatgcagtttgagaagtttgagaacatacttagtaatataatatgtgggacactgctctaattttattgaaatcaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25815001 agagatggatttacttttctatatatgcagtttgagaagtttgagaacatacttagtaatataatatgtgggacactgctctaattttattgaaattaat 25814902  T
Q  112 catccgtgaaatttcgtgaaaacattaccccgtaccttttagcattttcc 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25814901 catccgtgaaatttcgtgaaaacattaccccgtaccttttagcattttcc 25814852  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 31252143 - 31252216
Alignment:
Q  12 agagatggatttacttttctatatatgcagtttgagaagtttgagaacatac---ttagtaatataatatgtgg 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  31252143 agagatggatttacttttctatatatgcagtttgagaagtttgagaacatacttattagtaatataatatgtgg 31252216  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 5281280 - 5281238
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||| | ||||||||||||||||| |||||||||    
T  5281280 tacaccctccggtcactaatataagtaaaaattcactttttag 5281238  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 5418662 - 5418618
Alignment:
Q  198 tgtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||| | | ||||||||| |||||||||||||||||    
T  5418662 tgtacaccctccgatcactaatataagcaaaaatttactttttag 5418618  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 23052779 - 23052625
Alignment:
Q  12 agagatggatttacttttctatatatgcagtttgagaagtttgagaacatacttagtaa----tataatatgtgggacactgctctaattttattgaaat 107  Q
    ||||||||||||||||||  | ||||| ||||||||||||| ||||| | |||| |||     | ||||||||||| ||| | ||| |||||||||||||    
T  23052779 agagatggatttactttttcaaatatggagtttgagaagttggagaatagacttggtaggtagtgtaatatgtgggccaccgttctgattttattgaaat 23052680  T
Q  108 caatcatccgtgaaatttcgtgaaaacattaccccgtaccttttagcattttccata 164  Q
     ||||||||||||||||||||  |||||||   ||||||| |||| |||||||||||    
T  23052679 taatcatccgtgaaatttcgtagaaacatt--tccgtaccatttaacattttccata 23052625  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 43446854 - 43446896
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  43446854 tacaccctccggttactaatataagcaaaaatttactttttag 43446896  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 26300106 - 26300148
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  26300106 tacaccctccggtcactaatataagcaaaaatttactttttag 26300148  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 26300256 - 26300214
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  26300256 tacaccctccggtcactaatataagtaaaattttactttttag 26300214  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 6763690 - 6763726
Alignment:
Q  198 tgtacaccctccggttattaatataagtaaaaattta 234  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  6763690 tgtacaccctccggtcattaatataagcaaaaattta 6763726  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 27772195 - 27772235
Alignment:
Q  162 atactttaatatgcaacaaaacattaatgataatactgtac 202  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27772195 atactttaatatgcaacaaaacattaatgataatactgtac 27772235  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 14310516 - 14310557
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttacttttta 241  Q
    ||||||||||||| |||||||||||||||||| ||| |||||    
T  14310516 tacaccctccggtcattaatataagtaaaaatctacatttta 14310557  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 1739711 - 1739668
Alignment:
Q  199 gtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    |||||||||||||| | ||||||||| |||||||||||||||||    
T  1739711 gtacaccctccggtcactaatataagcaaaaatttactttttag 1739668  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 13211234 - 13211276
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||    
T  13211234 tacaccctctggtcattaatataagtaaaaatttattttttag 13211276  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 15285648 - 15285689
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttacttttta 241  Q
    ||||||||||||| |||||||||| |||||||||| ||||||    
T  15285648 tacaccctccggtcattaatataaataaaaatttatttttta 15285689  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 15466017 - 15466058
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttacttttta 241  Q
    ||||||||||||| |||||||||| |||||||||| ||||||    
T  15466017 tacaccctccggtcattaatataaataaaaatttatttttta 15466058  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 9056168 - 9056124
Alignment:
Q  198 tgtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||||| | ||||||||| ||||||| |||||||||    
T  9056168 tgtacaccctccggtcactaatataagcaaaaattcactttttag 9056124  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 1706827 - 1706870
Alignment:
Q  199 gtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    |||||||||||||| | ||||||||||||||||||| |||||||    
T  1706827 gtacaccctccggtcactaatataagtaaaaatttattttttag 1706870  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 12171235 - 12171279
Alignment:
Q  198 tgtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||||| ||||||||||| ||||||||  |||||||    
T  12171235 tgtacaccctccggtcattaatataagcaaaaatttgatttttag 12171279  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 52168277 - 52168320
Alignment:
Q  199 gtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    |||||||||||||| | ||||||||| |||||||||||||||||    
T  52168277 gtacaccctccggtcactaatataagcaaaaatttactttttag 52168320  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 22153195 - 22153162
Alignment:
Q  209 cggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||||| ||||||||||||||||||    
T  22153195 cggttattaatataaataaaaatttactttttag 22153162  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 3384217 - 3384260
Alignment:
Q  199 gtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||    
T  3384217 gtacaccctccggtcattaatataagcaaaaattcactttttag 3384260  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 14418202 - 14418160
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||    
T  14418202 tacaccctccggtcattaatataagcaaaaattcactttttag 14418160  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 15440007 - 15439966
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttacttttta 241  Q
    |||||||| |||||||||||||||| ||||||| ||||||||    
T  15440007 tacacccttcggttattaatataagcaaaaattgacttttta 15439966  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 4060318 - 4060274
Alignment:
Q  198 tgtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||||| | ||||||||| |||||| ||||||||||    
T  4060318 tgtacaccctccggtcactaatataagcaaaaatctactttttag 4060274  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 54383 - 54425
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||||| ||||||||| |||||| ||||||||||    
T  54383 tacaccctccggttactaatataagcaaaaatctactttttag 54425  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 120290 - 120248
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  120290 tacaccctccggtcactaatataagcaaaaatttactttttag 120248  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 43426773 - 43426731
Alignment:
Q  200 tacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||    
T  43426773 tacaccctccggtcattaatataagcaaaaatttattttttag 43426731  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 9431190 - 9431234
Alignment:
Q  198 tgtacaccctccggttattaatataagtaaaaatttactttttag 242  Q
    ||||||||||||||| | ||||||||||||||| |||| ||||||    
T  9431190 tgtacaccctccggtcactaatataagtaaaaaattacattttag 9431234  T

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