View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_56 (Length: 255)
Name: NF9310_low_56
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 52579243 - 52579480
Alignment:
| Q |
1 |
caatatcaatattaccatgatccttatcgtctctctatcggtagtaattgacaagaaactttatatttatttcggtacagagggacaaatgaaaccgatt |
100 |
Q |
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| T |
52579243 |
caatatcaatattaccatgatccttatcgtctctctatcggtagtaattgacaagaaactttatatttatttcggtacagagggacaaatgaaaccgatt |
52579342 |
T |
|
| Q |
101 |
agttattgctggatccgcaatgcatgcaagtaaagtattagtctaaacaaaatcctttaaataattctttataatttgtgtactctatatgggtgacaag |
200 |
Q |
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| T |
52579343 |
agttattgctggatccgcaatgcttgcaagtaaagtattagtccaaacaaaatcctttaaataattctttataacttatctactc-atatgggtgacaag |
52579441 |
T |
|
| Q |
201 |
acaaggacaacctcggagtataaataattgagctcgtct |
239 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
52579442 |
acaaggacaacctcggagtataaataattgagttcgtct |
52579480 |
T |
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