View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_65 (Length: 249)
Name: NF9310_low_65
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_65 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33144837 - 33145077
Alignment:
| Q |
1 |
ccaaaggtctttttccagttaagagttctaatagcataaccccaaatgaaaaaacatcagatttctctgtcaattttccacttgatgcatattctggggc |
100 |
Q |
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| T |
33144837 |
ccaaaggtctttttccagttaagagttctaatagcataaccccaaatgaaaaaacatcagatttctctgtcaattttccacttgatgcatattctggggc |
33144936 |
T |
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| Q |
101 |
catatacctatgtcaacatgaaaatttaggatgtcaattttatcttcgtaacttatgttcttaggttacaagttagcccgactctttcgcaagtatttag |
200 |
Q |
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| T |
33144937 |
catatacctatgtcagcatgaaaatttaggatgtcaattttatcttcgtaacttatgttcttaggttacaagttagcacgactctttcgcaagtatttag |
33145036 |
T |
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| Q |
201 |
agcgtagaatgaaaaattacccgaatgttcccataacacga |
241 |
Q |
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| T |
33145037 |
atcgtagaatgaaaaattacccgaatgttcccatgacacga |
33145077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 27157948 - 27157877
Alignment:
| Q |
38 |
aaccccaaatgaaaaaacatcagatttctctgtcaattttccacttgatgcatattctggggccatatacct |
109 |
Q |
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| T |
27157948 |
aaccccaaatgagaaaacatctgatctatccgttaattttccacttgttgcatactctggagccatgtacct |
27157877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 7564595 - 7564486
Alignment:
| Q |
15 |
ccagttaagagttctaatagcataaccccaaatgaaaaaacatcagatttctctgtcaattttccacttgatgcatattctggggccatatacctatgtc |
114 |
Q |
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| T |
7564595 |
ccagttacaagttccaatagcatgaccccaaatgagaaaacgtcggacttctctgtcaattttccacttgatgcatattcaggggctagatacctaagtt |
7564496 |
T |
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| Q |
115 |
aacatgaaaa |
124 |
Q |
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| T |
7564495 |
aacatgaaaa |
7564486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 14654 - 14740
Alignment:
| Q |
23 |
gagttctaatagcataaccccaaatgaaaaaacatcagatttctctgtcaattttccacttgatgcatattctggggccatatacct |
109 |
Q |
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| T |
14654 |
gagttccaaaagcacaactccaaaagaatatacatcagacttgtcagtcaattttccacttgatgcatattcaggggcaacatacct |
14740 |
T |
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