View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_7 (Length: 572)
Name: NF9310_low_7
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Complemental strand, 4893725 - 4893281
Alignment:
| Q |
9 |
acttttttcagtataaggtcacacccacactcaatatatatggcgtacaactatgctttcttttcaattatcaataaagcatagcattgataaaccaaac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4893725 |
acttttttcagtataaggtcacacccacactcaatatatatggcgtacaactatgctttcttttcaattatcaataaagcatagcattgataaaccaaac |
4893626 |
T |
|
| Q |
109 |
actacgtgccnnnnnnngtt-ggaataatggtgtactctttggtttctgatttcggtgctatagctatctctcgtgctgttgctctctcttgtgaaagag |
207 |
Q |
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| T |
4893625 |
actacgttcctttttttttttggaataatggtgtactctttggtttctgatttcggtgctatagctatctctcgtgctgttgctctctcttgtgaaagag |
4893526 |
T |
|
| Q |
208 |
tgttgcaagaaactgcaaaaagaggacttattgatcacaaattgcaaaggaaacttgtgcatacatcctttggactggccttcatgctatgttggccatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4893525 |
tgttgcaagaaactgcaaaaagaggacttattgatcacaaattgcaaaggaaacttgtgcatacatcctttggactggccttcatgctatgttggccatt |
4893426 |
T |
|
| Q |
308 |
attcagcaatgaccgatgggcatcgttctttgctgttttggttccgggagtttatatgtttcggatacttgtgactgaacttggaa--tataaagatgag |
405 |
Q |
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| T |
4893425 |
attcagtaatgaccgatgggcatcgttctttgctgttttggttccgggagtttatatgtttcggatacttgtgactgaacttggaatatataaagatgag |
4893326 |
T |
|
| Q |
406 |
gccattgtgaaatcattgagcagatttggagattatagggtgctt |
450 |
Q |
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| T |
4893325 |
gccattgtgaaatcattgagcagatttggagattatagggtgctt |
4893281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 45 - 444
Target Start/End: Complemental strand, 4874039 - 4873632
Alignment:
| Q |
45 |
tatatggcgtacaactatgctttcttttcaattatcaataaagcatagcattgataaaccaaacactacgtgccnnnnnnn------gttggaataatgg |
138 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | || | || || ||||||||||||| |
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| T |
4874039 |
tatatagcgtacaactatgccttcttttcaattatcaataaagcatagctttgataaaccatataccatgtaccctttttttcttttgttggaataatgg |
4873940 |
T |
|
| Q |
139 |
tgtactctttggtttctgatttcggtgctatagctatctctcgtgctgttgctctctcttgtgaaagagtgttgcaagaaactgcaaaaagaggacttat |
238 |
Q |
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| |||||||||||||||||||| |||||| ||||||||||||||||||| || |||||||||| |||||||||| ||||||| |||||||||||||| | |
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| T |
4873939 |
tatactctttggtttctgatttaggtgctgcagctatctctcgtgctgttactttctcttgtgatagagtgttgcgagaaacttcaaaaagaggactttt |
4873840 |
T |
|
| Q |
239 |
tgatcacaaattgcaaaggaaacttgtgcatacatcctttggactggccttcatgctatgttggccattattcagcaatgaccgatgggcatcgttcttt |
338 |
Q |
| |
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|||||| |||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | | | |
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| T |
4873839 |
tgatcagaaattgcatagaaaacttgtgcatatatcctttggactgctattcatgctatgttggccattattcagtaatgaccgatgggcatcttgttat |
4873740 |
T |
|
| Q |
339 |
gctgttttggttccgggagtttatatgtttcggatacttgtgactgaacttggaa--tataaagatgaggccattgtgaaatcattgagcagatttggag |
436 |
Q |
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|||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
4873739 |
gctgctttggctccgggagtttatatgtgtcggatacttgtgactaaacttggaatatataaagatgaggccattgtgaaatcattaagcagaattggag |
4873640 |
T |
|
| Q |
437 |
attatagg |
444 |
Q |
| |
|
|||||||| |
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|
| T |
4873639 |
attatagg |
4873632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 4874879 - 4874813
Alignment:
| Q |
51 |
gcgtacaactatgctttcttttcaattatcaataaagcatagcattgataaaccaaacactacgtgc |
117 |
Q |
| |
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| T |
4874879 |
gcgtacaactatgctttcttttcaattatcaataaagcatagctttgataaaccatacaccacgtgc |
4874813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 451 - 557
Target Start/End: Original strand, 19996683 - 19996788
Alignment:
| Q |
451 |
tattgaacatagaagaaaatataggaaatacacaaccttccatagataactggcagcacaagaaagccacttaataggacttttttgtctttttctgtac |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||| | |||| ||||||||||||| |
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| T |
19996683 |
tattgaacatagaagaaaatataggaaatacacaacattccatagatagcttgcagcacaagaaagccacttaa-agggcattttaatctttttctgtac |
19996781 |
T |
|
| Q |
551 |
ttcttct |
557 |
Q |
| |
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||||||| |
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| T |
19996782 |
ttcttct |
19996788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 444
Target Start/End: Complemental strand, 26331854 - 26331729
Alignment:
| Q |
321 |
cgatgggcatcgttctttgctgttttggttccgggagtttatatgtttcggatacttgtgactgaacttggaatat--aaagatgaggccattgtgaaat |
418 |
Q |
| |
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|||||||| |||||| ||||| ||| ||||||||||| |||| ||||||| |||| | || | |||||||| ||||| ||||||| ||| |||| |
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| T |
26331854 |
cgatgggctccgttctatgctgcttttattccgggagttaatatacttcggatgtttgttattggaagtggaatattgaaagacgaggccactgttaaat |
26331755 |
T |
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| Q |
419 |
cattgagcagatttggagattatagg |
444 |
Q |
| |
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|| ||||||||||||||||||||||| |
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| T |
26331754 |
caatgagcagatttggagattatagg |
26331729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 557
Target Start/End: Original strand, 9458123 - 9458187
Alignment:
| Q |
492 |
atagataactggcagcacaagaaagccacttaataggacttttttgtctttttctgtacttcttct |
557 |
Q |
| |
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||||||| || |||||||||||||||||||||| ||| |||||| |||||||| || |||||||| |
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| T |
9458123 |
atagatagcttgcagcacaagaaagccacttaa-agggctttttagtctttttacgttcttcttct |
9458187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 557
Target Start/End: Original strand, 9462220 - 9462284
Alignment:
| Q |
492 |
atagataactggcagcacaagaaagccacttaataggacttttttgtctttttctgtacttcttct |
557 |
Q |
| |
|
||||||| || |||||||||||||||||||||| ||| |||||| |||||||| || |||||||| |
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| T |
9462220 |
atagatagcttgcagcacaagaaagccacttaa-agggctttttagtctttttacgttcttcttct |
9462284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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