View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9310_low_75 (Length: 241)
Name: NF9310_low_75
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_75 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 1156775 - 1156565
Alignment:
| Q |
17 |
acatcaattttattaacgtttctagaacaaatatatacaatactttattttttctattagaagatggaagattctacaagatctaacttaactcgtaaac |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156775 |
acatcaattttattaacgtt-ctagaacaaatatatacaatactttattttttctactaaaagatggaagattctacaagatctaacttaactcgtaaac |
1156677 |
T |
|
| Q |
117 |
tcgtaaatgattgtcacaaacgtgttgggaaagtcgtattgaaagtgaaaacctt--taagatttcaaacttcacaagtgagaaatgctttaatgaaatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156676 |
tcgtaaatgattgtcacaaacgtgttgggaaagtcgtattgaaagtgaaaacctttataagatttcaaacttcacaagtgagaaatgctttaatgaaatt |
1156577 |
T |
|
| Q |
215 |
aggtgaagttag |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1156576 |
aggtgaagttag |
1156565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 39314994 - 39315074
Alignment:
| Q |
139 |
tgttgggaaagtcgtattgaaagtg-aaaacctttaagatttcaaacttcacaagtgagaaatgctttaatgaaattaggt |
218 |
Q |
| |
|
||||| |||||||||||| |||||| ||||| ||||| |||||||||||||||||| ||| ||| |||| | ||||||||| |
|
|
| T |
39314994 |
tgttgagaaagtcgtattaaaagtgtaaaacttttaatatttcaaacttcacaagtaagagatgttttatttaaattaggt |
39315074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 9643762 - 9643718
Alignment:
| Q |
181 |
aaacttcacaagtgagaaatgctttaatgaaattaggtgaagtta |
225 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||| ||||||| |
|
|
| T |
9643762 |
aaacttcacaagtaagagatgctttattgaaattaggcgaagtta |
9643718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University