View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_80 (Length: 238)
Name: NF9310_low_80
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 20364136 - 20363904
Alignment:
| Q |
1 |
taatcttcattcttgtctttccccttctttttgttctcaatgcaagcatctcttgcaagtcttgtaataaaccagtccttcatccatcacattaatggtc |
100 |
Q |
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| T |
20364136 |
taatcttcattcttgtctttccccttctttttgttctcaatgcaagcatctcttgcaagtcttgtaatcaaccagtaattcatccatcacattaatgg-c |
20364038 |
T |
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| Q |
101 |
tcaagaatttatagtgatcaaaataggggcaaagtgaaatcgttcaatattcgatttacaagaatctacctttaatagccttctatatgtcgaagaaatc |
200 |
Q |
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| T |
20364037 |
tcaagaatttatagtgatcaaaataggggcaaagtgaaatcgttcaatattcgatttacaagaatctacctttaatagccttctatatgtcgaagaaatc |
20363938 |
T |
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| Q |
201 |
aaattaagaaagtgaatattccaaacatgcaaca |
234 |
Q |
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| T |
20363937 |
aaattaagaaagtgaatattccaaacatgcaaca |
20363904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 20371822 - 20371635
Alignment:
| Q |
53 |
ttgcaagtcttgtaataaaccagtccttcatccatcacattaatggtctcaa--gaatttatagtgatcaaaataggggcaaagtgaaatcgttcaatat |
150 |
Q |
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|||||||| |||| || ||||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
20371822 |
ttgcaagttttgtcatcaaccagtaattcttccatcacattaatggtctcaaaagaatttgtagtgatcaaaataggggcaaagtgagatcgttcaatat |
20371723 |
T |
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| Q |
151 |
tcgatttacaagaatctacctttaatagccttctatatgtcgaagaaatcaaattaagaaagtgaatattccaaacatgcaacagaac |
238 |
Q |
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| T |
20371722 |
ttgatttacaagaatctacctttaatagccttctatatgtcgaagaaatcaaattaagaaagtgaatattccaaacatgcaacagaac |
20371635 |
T |
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