View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9310_low_9 (Length: 523)
Name: NF9310_low_9
Description: NF9310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9310_low_9 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Original strand, 12039618 - 12040113
Alignment:
| Q |
16 |
gtcacaccttgtctgactggctcggtttacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagct |
115 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12039618 |
gtcacaccttgtctgactggttcggttcacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagct |
12039717 |
T |
|
| Q |
116 |
tccacatctcaaggttctccaacttcgaaggttggactcactgaaattcattgcaaaagacaataaagttggtaatttcccttcctttactacaccaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
12039718 |
tccacatctcaaggttctccaacttcgaaggttggactcactgaaattcattgcaaaaaacaatcaagttggtaatttcccttcctttactacaccaata |
12039817 |
T |
|
| Q |
216 |
ttattttttccatccttgaaggaacttacaatctcggattgtcctaatctaaatagttggtgggaaactgagatatgggataatgatagaccatgtttca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12039818 |
ttattttttccatccttgaaggaacttacaatctcggattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttca |
12039917 |
T |
|
| Q |
316 |
gttgcatttccaaactaaatgtccaatattgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12039918 |
gttgcatttccaaactaaatgtccaatattgccccaagttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgt |
12040017 |
T |
|
| Q |
416 |
aaggtcaatgagggatacaatgcattatgctgacagtaccgaatgcactgaaaattctaattcaaaaacacaacccttctccaaattgatgtccat |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||||| |
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|
| T |
12040018 |
aaggtcaatgagggatacaatgcattatgctgacagtaccgaaagcactgaaaattctaattcacaatcacaacccttctccaaattgaagtccat |
12040113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 11901683 - 11901251
Alignment:
| Q |
16 |
gtcacaccttgtctgactggctcggtttacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagct |
115 |
Q |
| |
|
|||||||||||||| |||||||| || | || ||||||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||| |||| |
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|
| T |
11901683 |
gtcacaccttgtctaactggctccattccatccagtgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagct |
11901584 |
T |
|
| Q |
116 |
tccacatctcaaggttctccaacttcgaaggttggactcactgaaattcattgcaaaagacaataaagttggtaatttcccttcctttactacaccaata |
215 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||||| ||||||||||||||| || ||||| |||||||||||| |||||||| |||||| |||||| |
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|
| T |
11901583 |
tccacatctcaaggttctccaaattcggagactggactctctgaaattcattgcagaaaacaatcaagttggtaattccccttcctctactaccccaata |
11901484 |
T |
|
| Q |
216 |
ttattttttccatccttgaaggaacttacaatctcggattgtcctaatctaaatagttggtgggaaactgagatatgggataatgatagaccatgtttca |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||| |||| |||||||||||||| ||||| |
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|
| T |
11901483 |
ttgttttttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttca |
11901384 |
T |
|
| Q |
316 |
gttgcatttccaaactaaatgtccaatattgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgt |
415 |
Q |
| |
|
|||||||||| |||||||| |||||| ||| || | |||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||| ||||| |
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|
| T |
11901383 |
gttgcatttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatgagcttgttcttgtggagtcgaacgt |
11901284 |
T |
|
| Q |
416 |
aaggtcaatgagggatacaatgcattatgctga |
448 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| |
|
|
| T |
11901283 |
aagatcaatgagggatacaatgcatcatgctga |
11901251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 511
Target Start/End: Original strand, 11828718 - 11829192
Alignment:
| Q |
16 |
gtcacaccttgtctgactggctcggtttacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagct |
115 |
Q |
| |
|
||||||| |||||| ||||||||| || |||||| || |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
11828718 |
gtcacacattgtctaactggctcgcttcacttcaatgccttgttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagct |
11828817 |
T |
|
| Q |
116 |
tccacatctcaaggttctccaacttcgaaggttggactcactgaaattcattgcaaaagacaataaagttggtaatttcccttcctttactacaccaata |
215 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| ||||||| |||||||| ||||| ||| || |||||| ||| |
|
|
| T |
11828818 |
tccacatctcaaggttctccaacttcggagattggactctttgaaatttattgcaaagaacaatcaagctg------------------atacacctata |
11828899 |
T |
|
| Q |
216 |
ttattttttccatccttgaaggaacttacaatctcggattgtcctaatctaaatagttggtgggaaactgagatatgggataatgatagaccatgtttca |
315 |
Q |
| |
|
|| || |||||||||||||||||| |||||||| ||||||| ||| ||||| |||||||||||| ||| |||||||| ||||||||||||| ||||| |
|
|
| T |
11828900 |
ttctt---tccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaaaatgacatatgggacaatgatagaccatctttca |
11828996 |
T |
|
| Q |
316 |
gttgcatttccaaactaaatgtccaatattgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgt |
415 |
Q |
| |
|
|||||||||| || |||||| ||||||| || || ||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
11828997 |
gttgcatttcaaagctaaatatccaatactgtcctcaattagcttgcatgctgctctatcccggtcttgatgatgagctcgttctggtggagtcgaacgt |
11829096 |
T |
|
| Q |
416 |
aaggtcaatgagggatacaatgcattatgctgacagtaccgaatgcactgaaaattctaattcaaaaacacaacccttctccaaattgatgtccat |
511 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||| || ||||||||||||| ||||||| |||||| |
|
|
| T |
11829097 |
aagatcaatgagggatacaatgcattatgctgacagtactgaaagcactgaaacatctagttcacaatcacaacccttctcgaaattgaagtccat |
11829192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 222 - 437
Target Start/End: Original strand, 11861035 - 11861250
Alignment:
| Q |
222 |
tttccatccttgaaggaacttacaatctcggattgtcctaatctaaatagttggtgggaaactgagatatgggataatgatagaccatgtttcagttgca |
321 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| || ||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
11861035 |
tttccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttcagttgca |
11861134 |
T |
|
| Q |
322 |
tttccaaactaaatgtccaatattgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaaggtc |
421 |
Q |
| |
|
|||| || |||||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| | ||||| || |
|
|
| T |
11861135 |
tttcaaagctaaatatccaatattgtcctcagttagcttccatgccactatatcccggtcttgatgatgagctcgttgtggtggagtcgagcgtaatatc |
11861234 |
T |
|
| Q |
422 |
aatgagggatacaatg |
437 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
11861235 |
aatgaaggatacaatg |
11861250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 11860858 - 11861004
Alignment:
| Q |
24 |
ttgtctgactggctcggtttacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatc |
123 |
Q |
| |
|
|||||| | ||||||| || |||||| | |||| ||| ||||||||||| ||||| || || ||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
11860858 |
ttgtctaattggctcgcttcacttcaattccttggtaaatttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatc |
11860957 |
T |
|
| Q |
124 |
tcaaggttctccaacttcgaaggttggactcactgaaattcattgca |
170 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
11860958 |
tcaaggttctccaacttcggagattggactctttgaaattcattgca |
11861004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 11732526 - 11732676
Alignment:
| Q |
20 |
caccttgtctgactggctcggtttacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttcca |
119 |
Q |
| |
|
|||||| ||| | ||||||| || ||||| || ||||||||||||||||||| |||||| || |||||| ||||||| |||||||| ||| | |||||| |
|
|
| T |
11732526 |
caccttatctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgatcaccttcca |
11732625 |
T |
|
| Q |
120 |
catctcaaggttctccaacttcgaaggttggactcactgaaattcattgca |
170 |
Q |
| |
|
||||||||| |||||| ||||| |||||||| || || ||||||||||| |
|
|
| T |
11732626 |
aatctcaaggctctccatcttcggaggttggaatctcttgaattcattgca |
11732676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 430
Target Start/End: Original strand, 11732728 - 11732939
Alignment:
| Q |
222 |
tttccatccttgaaggaacttacaatctcggattgtcctaatctaaatagttggtgggaaactg---agatatgggataatgatagaccatgtttcagtt |
318 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||| || | ||||||||||||| || ||| || | | || | ||||||| |||| || |
|
|
| T |
11732728 |
tttccagccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagaccatctttccctt |
11732827 |
T |
|
| Q |
319 |
gcatttccaaactaaatgtccaatattgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaag |
418 |
Q |
| |
|
||||||| ||||||||| ||| || ||| || | ||||| ||| ||||||| | | ||||||| ||||| ||| | |||||||| || || || ||||| |
|
|
| T |
11732828 |
gcatttcaaaactaaatatccgatgttgtcctaaattagcatgcgtgccactgtgtactaatctcgatgaagagttggttctggtagattccaatgtaag |
11732927 |
T |
|
| Q |
419 |
gtcaatgaggga |
430 |
Q |
| |
|
||||||||||| |
|
|
| T |
11732928 |
atcaatgaggga |
11732939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 11973792 - 11973736
Alignment:
| Q |
222 |
tttccatccttgaaggaacttacaatctcggattgtcctaatctaaatagttggtgg |
278 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| |||||||||||||| || || |||||| |
|
|
| T |
11973792 |
tttccatctttggaggaactcacaatctcagattgtcctaatctcaagaggtggtgg |
11973736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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