View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_high_10 (Length: 250)
Name: NF9311_high_10
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 6257337 - 6257098
Alignment:
| Q |
11 |
cataggcctaacagcaattatatgtaaagagaatttgaaatta-atcttctaacaaaaacttttttgacacacatgcgagtcatttaaattatatgatgt |
109 |
Q |
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| T |
6257337 |
cataggcctaacaggaattatatgtaaagagaatttgaaattacatcttc-aacaaaaacctttttggcacacatacgagtcatctaaattatatgctgc |
6257239 |
T |
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| Q |
110 |
tcaacattcactttttcatcaaatgtaagacttttaacttacatttgtcgccaaatatctctcactcaagtgtaaatttatctattcatttaagtatctt |
209 |
Q |
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| T |
6257238 |
tcaacattcactttttcatcaaatgtgagacttttaactcacatttgtcgccaaatatctctcactcaagtgtgaatttatctattcttttaagtatctt |
6257139 |
T |
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| Q |
210 |
tcccctcaaacagaagctttttcatccacatacacttgcac |
250 |
Q |
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| T |
6257138 |
tcccctcaaacagaagctttttcatccacatacacttgcac |
6257098 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 45811365 - 45811420
Alignment:
| Q |
90 |
tcatttaaattatatgatgttcaacattcactttttcatcaaatgtaagactttta |
145 |
Q |
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| T |
45811365 |
tcattttacttatatgatgttcaacattcactttttcatcaaatatgagactttta |
45811420 |
T |
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