View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9311_high_21 (Length: 206)

Name: NF9311_high_21
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9311_high_21
NF9311_high_21
[»] chr7 (20 HSPs)
chr7 (18-199)||(10576669-10576851)
chr7 (18-199)||(44164693-44164875)
chr7 (18-198)||(34707113-34707294)
chr7 (16-199)||(29238091-29238275)
chr7 (56-199)||(24320428-24320571)
chr7 (37-199)||(29555909-29556071)
chr7 (18-187)||(34259526-34259696)
chr7 (18-135)||(29981063-29981181)
chr7 (63-199)||(32876526-32876662)
chr7 (35-135)||(19334528-19334628)
chr7 (74-131)||(10334242-10334299)
chr7 (74-135)||(15017833-15017894)
chr7 (74-131)||(17303121-17303178)
chr7 (152-198)||(33057743-33057789)
chr7 (152-198)||(17303201-17303248)
chr7 (152-198)||(19334647-19334693)
chr7 (154-198)||(10334173-10334218)
chr7 (46-103)||(41853203-41853260)
chr7 (152-180)||(29981198-29981226)
chr7 (74-118)||(43342487-43342531)
[»] chr1 (21 HSPs)
chr1 (18-199)||(10155966-10156148)
chr1 (18-199)||(49902464-49902646)
chr1 (18-199)||(3346782-3346964)
chr1 (18-199)||(42517244-42517430)
chr1 (18-199)||(7742729-7742911)
chr1 (18-199)||(47022698-47022880)
chr1 (18-199)||(48392356-48392538)
chr1 (18-195)||(5974988-5975166)
chr1 (35-131)||(38859915-38860011)
chr1 (18-198)||(23908282-23908453)
chr1 (152-199)||(29149633-29149680)
chr1 (56-128)||(10907637-10907709)
chr1 (67-131)||(42456636-42456700)
chr1 (74-135)||(13131956-13132017)
chr1 (74-135)||(26835398-26835459)
chr1 (152-198)||(10907734-10907781)
chr1 (152-199)||(26835332-26835380)
chr1 (67-135)||(30745404-30745472)
chr1 (67-135)||(30766855-30766923)
chr1 (152-195)||(38859849-38859893)
chr1 (103-135)||(45968727-45968759)
[»] chr5 (18 HSPs)
chr5 (18-198)||(16618520-16618701)
chr5 (18-199)||(6257360-6257542)
chr5 (21-198)||(38397595-38397773)
chr5 (18-199)||(37168983-37169165)
chr5 (18-199)||(39862437-39862619)
chr5 (18-199)||(23218481-23218663)
chr5 (17-195)||(15631613-15631793)
chr5 (57-130)||(27916205-27916278)
chr5 (35-135)||(29491382-29491481)
chr5 (74-117)||(614399-614442)
chr5 (152-198)||(25560413-25560460)
chr5 (67-118)||(36769074-36769125)
chr5 (74-135)||(25560334-25560395)
chr5 (74-131)||(29790226-29790283)
chr5 (74-127)||(33188330-33188383)
chr5 (74-135)||(42119682-42119743)
chr5 (152-195)||(614478-614522)
chr5 (152-199)||(36769159-36769207)
[»] chr2 (15 HSPs)
chr2 (18-198)||(29846439-29846620)
chr2 (18-199)||(14941994-14942176)
chr2 (18-199)||(42769708-42769890)
chr2 (18-199)||(14186388-14186570)
chr2 (18-199)||(19181544-19181726)
chr2 (18-199)||(40277238-40277420)
chr2 (18-106)||(3597840-3597929)
chr2 (39-135)||(3956632-3956728)
chr2 (152-199)||(3597952-3597999)
chr2 (77-135)||(41674716-41674774)
chr2 (74-135)||(2888101-2888162)
chr2 (67-129)||(14539704-14539766)
chr2 (69-135)||(33009733-33009799)
chr2 (152-199)||(1387373-1387421)
chr2 (74-130)||(43139812-43139868)
[»] chr3 (22 HSPs)
chr3 (17-199)||(44994917-44995101)
chr3 (18-198)||(21853194-21853375)
chr3 (16-199)||(8950452-8950636)
chr3 (18-198)||(13856096-13856277)
chr3 (18-199)||(5391453-5391635)
chr3 (18-199)||(40845867-40846049)
chr3 (43-199)||(32352843-32352999)
chr3 (152-199)||(23467579-23467626)
chr3 (20-131)||(20382583-20382693)
chr3 (18-131)||(36539696-36539810)
chr3 (74-130)||(50663199-50663255)
chr3 (74-135)||(19649379-19649440)
chr3 (74-135)||(54546964-54547025)
chr3 (57-117)||(3178781-3178841)
chr3 (67-135)||(22845362-22845430)
chr3 (67-131)||(43347336-43347400)
chr3 (152-198)||(19649459-19649506)
chr3 (152-198)||(43347422-43347468)
chr3 (67-131)||(1781826-1781890)
chr3 (67-131)||(10839380-10839444)
chr3 (152-199)||(10839466-10839514)
chr3 (67-135)||(46685784-46685851)
[»] chr6 (12 HSPs)
chr6 (18-199)||(24694601-24694783)
chr6 (18-198)||(9231804-9231985)
chr6 (61-199)||(14309792-14309930)
chr6 (18-130)||(13627605-13627718)
chr6 (152-199)||(11084606-11084653)
chr6 (58-130)||(1727924-1727996)
chr6 (18-118)||(11084667-11084767)
chr6 (21-131)||(24497527-24497638)
chr6 (54-131)||(28750637-28750714)
chr6 (68-131)||(13103119-13103182)
chr6 (152-199)||(13627536-13627583)
chr6 (74-135)||(27863759-27863821)
[»] chr8 (12 HSPs)
chr8 (18-199)||(33934319-33934501)
chr8 (18-195)||(42013872-42014050)
chr8 (18-198)||(22324593-22324774)
chr8 (20-199)||(21525354-21525534)
chr8 (18-199)||(35806790-35806972)
chr8 (18-135)||(42072488-42072606)
chr8 (18-199)||(26021391-26021575)
chr8 (74-135)||(10112107-10112168)
chr8 (74-131)||(2824189-2824246)
chr8 (67-135)||(19334843-19334911)
chr8 (152-199)||(19334778-19334825)
chr8 (152-199)||(42072424-42072471)
[»] chr4 (24 HSPs)
chr4 (18-199)||(1535767-1535949)
chr4 (56-199)||(25954746-25954889)
chr4 (37-199)||(49284353-49284515)
chr4 (56-199)||(37801253-37801396)
chr4 (18-199)||(36012136-36012317)
chr4 (56-195)||(34240993-34241132)
chr4 (18-135)||(16338163-16338281)
chr4 (18-199)||(35018932-35019113)
chr4 (37-118)||(36851357-36851438)
chr4 (20-131)||(17888502-17888614)
chr4 (152-198)||(16338329-16338375)
chr4 (154-199)||(52632514-52632559)
chr4 (35-131)||(20818631-20818727)
chr4 (35-131)||(11054520-11054615)
chr4 (67-135)||(46474054-46474122)
chr4 (152-195)||(46583626-46583669)
chr4 (35-116)||(31377469-31377549)
chr4 (68-131)||(54090244-54090307)
chr4 (35-129)||(33982070-33982164)
chr4 (74-135)||(50328856-50328917)
chr4 (152-198)||(17888636-17888683)
chr4 (44-131)||(47084076-47084163)
chr4 (154-198)||(31377385-31377430)
chr4 (74-118)||(19124745-19124789)
[»] scaffold0079 (2 HSPs)
scaffold0079 (18-135)||(54579-54697)
scaffold0079 (152-198)||(54485-54531)
[»] scaffold0086 (1 HSPs)
scaffold0086 (74-135)||(20838-20899)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 10576851 - 10576669
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  10576851 aggggcggttctaaggtccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 10576752  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                |||||||||||||||||||||||||||||||||||||||| |||||||    
T  10576751 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtattgcaaa 10576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 44164693 - 44164875
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||    
T  44164693 aggggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataa 44164792  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44164793 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44164875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 34707294 - 34707113
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||  | ||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  34707294 aggggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 34707195  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    || | |||||||||| |||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  34707194 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 34707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 29238091 - 29238275
Alignment:
Q  16 ataggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatat 114  Q
    |||||||||||||||||| | ||| ||||||||||||| | |||||| |||||||| | |||||||||||||||||||||| ||||| ||||| ||||||    
T  29238091 ataggggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatat 29238190  T
Q  115 aaactcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |||| | || |||||||| ||                ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  29238191 aaacccctaaaaattggaaaatttctttacattttttattatttgcttacaatttcttatgtaggccctataaatgtgttgcaaa 29238275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 24320428 - 24320571
Alignment:
Q  56 cgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaannnnnnnnnnnnnnnnatta 155  Q
    |||||| |||||||||| |||||||||||||||||||||||||||  ||||| |||||||||| | |||||||||| |||                ||||    
T  24320428 cgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttctttacattttttatta 24320527  T
Q  156 tttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24320528 tttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 24320571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 29555909 - 29556071
Alignment:
Q  37 gcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaan 136  Q
    ||||||| |||||||| | ||| || |||||||| | |||  ||||||||||||||||||||||| ||||| |||||||||| | ||||||||||||||     
T  29555909 gcgaccctgggcactcgcccggcctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaat 29556008  T
Q  137 nnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
                   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29556009 ttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 29556071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 34259696 - 34259526
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||| |||||||||| | |||||| |||||||| | |||||||||||||||||||||| ||||| ||||| ||||||||    
T  34259696 aggggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataa 34259597  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataa 187  Q
    || | |||||||||| |||                ||||||||||||||||||||||||||||||||||||    
T  34259596 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 34259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 29981063 - 29981181
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||  | ||||||| ||||||||| | |||||| |||||||| | |||||||||||||||||||||| ||||| ||||| ||||||||    
T  29981063 aggggcggttctaagacccggcgacctcgggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataa 29981162  T
Q  117 actcttataaattggacaa 135  Q
    |||  ||||||||||||||    
T  29981163 acttctataaattggacaa 29981181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 32876526 - 32876662
Alignment:
Q  63 cgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaannnnnnnnnnnnnnnnattatttgctt 162  Q
    |||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||| | ||||||||||||||                |||||||||||    
T  32876526 cgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgctt 32876625  T
Q  163 gcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |||||||||||||||||| ||||||||||||||||||    
T  32876626 gcaatttcttatgtacgctctataaatgtgttgcaaa 32876662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 19334528 - 19334628
Alignment:
Q  35 cggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggaca 134  Q
    |||||||||||| ||||| | | || ||||| |||| | |||||||||||||| ||||||| ||||| ||||| |||||||||| | |||||||||||||    
T  19334528 cggcgaccccggtcactcccccaggtttcggcccaatttttttgcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggaca 19334627  T
Q  135 a 135  Q
    |    
T  19334628 a 19334628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 10334299 - 10334242
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    |||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||    
T  10334299 ttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgg 10334242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 15017894 - 15017833
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||||||||||| ||||||||||| | ||||| |||||||||| | ||||||||||||||    
T  15017894 ttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaa 15017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 17303121 - 17303178
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||| ||| ||||||||    
T  17303121 ttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgg 17303178  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 33057743 - 33057789
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  33057743 attatttgcttgcaatttcttatgtaaatcctataaatgtgttgcaa 33057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 17303201 - 17303248
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||    
T  17303201 attatttgcttgcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 19334647 - 19334693
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||    
T  19334647 attatttgcttgcaatttcttatataaaccctataaatttgttgcaa 19334693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 10334218 - 10334173
Alignment:
Q  154 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  10334218 tatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 41853260 - 41853203
Alignment:
Q  46 ggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataa 103  Q
    ||||||| | |||||| ||| |||||| |||||||||||||| | |||||||||||||    
T  41853260 ggcactcgcccgggctccggcccaaattttttgcaatttcttatttaaattcctataa 41853203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Original strand, 29981198 - 29981226
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgc 180  Q
    |||||||||||||||||||||||||||||    
T  29981198 attatttgcttgcaatttcttatgtacgc 29981226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 43342531 - 43342487
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaac 118  Q
    |||||||||||||| ||||||||||| | ||||| ||||||||||    
T  43342531 ttttgcaatttcttatgtaaattcctctgaatttcttatataaac 43342487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 10155966 - 10156148
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||| | |||||| |||||||| | |||||||||||||||||||||||||||| ||||| ||||||||    
T  10155966 aggggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataa 10156065  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |||  ||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10156066 acttctataaattggacaatttctttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 10156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 49902646 - 49902464
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||||| |||||| |||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  49902646 aggggcggttctaaggtccggcgactccgggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 49902547  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | ||||||| || |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49902546 acccctataaatagggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 49902464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 3346964 - 3346782
Alignment:
Q  18 aggggcggttctaaggtcg-gcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    ||||||| ||||||||||  |||| ||||||||||| | || |||||||||||||| ||||||||||| |||||||||| ||||| ||||| ||||||||    
T  3346964 aggggcgattctaaggtccagcgatcccgggcactcgcccgagcttcgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataa 3346865  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | ||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346864 acccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 3346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 42517244 - 42517430
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatat-- 114  Q
    |||||||||||||||| | ||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||      
T  42517244 aggggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 42517343  T
Q  115 --aaactcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
      |||| | |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517344 acaaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 42517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 7742729 - 7742911
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||| | |||||| || || || | |||||||||||||||||||||| | ||| ||||| ||||||||    
T  7742729 aggggcggttctaaggcccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataa 7742828  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742829 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 7742911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 47022880 - 47022698
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||||||  |||| ||||| ||||||||    
T  47022880 aggggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataa 47022781  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |||| |||||||| | |||                ||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  47022780 actcctataaattaggcaatttctttatattttttattatttacttgtaatttcttatgtacgccctataaatatgttgcaaa 47022698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 48392356 - 48392538
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||| ||||||||| | |||||| || ||||| | |||||||||||||||||||||| ||||| ||||| ||||||||    
T  48392356 aggggcggttctaaggcccggcgacctcgggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataa 48392455  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |  | |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392456 atccctataaattgggcaatttcattacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 48392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 5975166 - 5974988
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||| ||||||||||| | ||||||||||||||||| | |||||| |||||||||| |||| ||||||||||||||||| ||||  ||||| ||||||||    
T  5975166 agggacggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataa 5975067  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttg 195  Q
    || | |||||||| | |||                ||||||||||||||||||||||||||||||||||||||||||||    
T  5975066 acccctataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 5974988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 38860011 - 38859915
Alignment:
Q  35 cggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    |||||||||||||||||| | |||||| ||| |||||| |||| ||||||||| ||||||||||||| ||||| |||||||||| | ||||||||||    
T  38860011 cggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaacccctataaattgg 38859915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 23908453 - 23908282
Alignment:
Q  18 aggggcggttctaagg-tcggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    ||||||||||||||||  |||||||||| ||||||| | |||||| |||||||          ||||| |||||||||||||||| ||||| ||||||||    
T  23908453 aggggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggcca----------aattttttgtgtaaattcctatgaatttcttatataa 23908364  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    |  | ||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  23908363 atccctataaattggacaatttctttatgttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 23908282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 29149633 - 29149680
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29149633 attatttgcttgcaatttcttatgtacgccctatacatgtgttgcaaa 29149680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 10907637 - 10907709
Alignment:
Q  56 cgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaat 128  Q
    |||||| ||| |||||| |||||||||||||| ||||||||||| | ||||| |||||||||| | |||||||    
T  10907637 cgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaat 10907709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 42456700 - 42456636
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    |||||| |||||| ||||||| ||||||||||||| ||||| |||||||||| | ||||||||||    
T  42456700 ccaaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgg 42456636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 13132017 - 13131956
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||    ||||||||||||||    
T  13132017 ttttgtaatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaa 13131956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 26835459 - 26835398
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||||||||| || ||||||||| ||| ||||| |||||||||||| ||||||||| ||||    
T  26835459 ttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaa 26835398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 10907734 - 10907781
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||    
T  10907734 attatttgcttgcaatttcttatgtagacacctataaatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 26835380 - 26835332
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaaa 199  Q
    |||||||||||||||||||| |||||  ||| |||||||||||||||||    
T  26835380 attatttgcttgcaatttctcatgtaaacccatataaatgtgttgcaaa 26835332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 30745472 - 30745404
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||||||||||||||| || |||||||| || | ||||| || ||||||  | ||||||||||||||    
T  30745472 ccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaa 30745404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 30766923 - 30766855
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||||||||||||||| || |||||||| || | ||||| || ||||||  | ||||||||||||||    
T  30766923 ccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaa 30766855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 38859893 - 38859849
Alignment:
Q  152 attatttgcttgcaatttcttatgt-acgccctataaatgtgttg 195  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||    
T  38859893 attatttgcttgcaatttcttatgtaaacccctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 45968759 - 45968727
Alignment:
Q  103 aattttttatataaactcttataaattggacaa 135  Q
    |||||||||||||| ||||||||||||||||||    
T  45968759 aattttttatataatctcttataaattggacaa 45968727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 6e-39; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 16618520 - 16618701
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||||||||||||   |||||| |||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||    
T  16618520 aggggcggttctaaggcccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataa 16618619  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    |||| ||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  16618620 actcctataaattggacaatttttttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 6257360 - 6257542
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||| ||    
T  6257360 aggggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaa 6257459  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6257460 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatatacgccctataaatgtgttgcaaa 6257542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 38397773 - 38397595
Alignment:
Q  21 ggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaact 119  Q
    ||||||||||||| | ||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||     
T  38397773 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 38397674  T
Q  120 cttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    | |||||||||| |||                |||||||||||||||||||||||||||| ||||||||||||||||||    
T  38397673 cctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgtcctataaatgtgttgcaa 38397595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 37168983 - 37169165
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||  | |||||| |||||||||| ||||||||||| |||||||||| ||||| ||||| ||||||||    
T  37168983 aggggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataa 37169082  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                |||||||||||||||||||||||||||||||||||||||||| |||||    
T  37169083 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgtggcaaa 37169165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 39862437 - 39862619
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||| | || ||| |||||||| | |||||||||||||||||||||||||||| ||||| ||||||||    
T  39862437 aggggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataa 39862536  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  39862537 acccctataaattgggcaatttctttagattttttattatttgcttgcaatttcttatatacgccctaaaaatgtgttgcaaa 39862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 23218663 - 23218481
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||| ||||||||||| | |||| | |||||||||  |||||||||||||||||||||| ||||| ||||| ||||||||    
T  23218663 aggggcggttctaaggcccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataa 23218564  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23218563 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtactccctataaatgtgttgcaaa 23218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 15631793 - 15631613
Alignment:
Q  17 taggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatata 115  Q
    ||||||||||||||||| | ||||||||||||||||| | |||||| | |||||||| |||| ||||||||||| ||||| ||||| ||||| |||||||    
T  15631793 taggggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatata 15631694  T
Q  116 aa-ctcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttg 195  Q
    || | | ||||||||||||||                ||||||||||||||||||||||||||||||||||||||| ||||    
T  15631693 aaccccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgcgttg 15631613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 27916278 - 27916205
Alignment:
Q  57 gggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattg 130  Q
    ||||||||| | |||| |||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||||    
T  27916278 gggcttcggcctaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattg 27916205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 29491382 - 29491481
Alignment:
Q  35 cggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggaca 134  Q
    |||||||||||| |||||   |||||||| | |||||| |||||||||||||| |||||||| |||| ||||| |||||| ||| | |||||||||||||    
T  29491382 cggcgaccccggacactcgtccgggcttcagcccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattggaca 29491480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 614399 - 614442
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaa 117  Q
    |||||||||||||| ||||||||||| | |||||||||||||||    
T  614399 ttttgcaatttcttatgtaaattcctctgaattttttatataaa 614442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 25560413 - 25560460
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  25560413 attatttgcttgcaatttcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 36769074 - 36769125
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaac 118  Q
    |||||| |||||||||||||| ||||||||||| | ||||| ||||||||||    
T  36769074 ccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaac 36769125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 25560334 - 25560395
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||| ||||||||| ||||||| | ||||||||| ||||||||||   ||||||||||||||    
T  25560334 tttttcaatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaa 25560395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 29790226 - 29790283
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    |||| ||||||||| ||||||||| ||| ||||| ||||||||||  |||||||||||    
T  29790226 ttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgg 29790283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 33188330 - 33188383
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaa 127  Q
    |||||||||||||| ||||||||| | ||||||| |||||||||| | ||||||    
T  33188330 ttttgcaatttcttatgtaaattcatctaaatttcttatataaacccctataaa 33188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 42119743 - 42119682
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||| |||||||| ||||||||||| | ||||| ||||||||||   ||||||||||||||    
T  42119743 ttttgtaatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaa 42119682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 614478 - 614522
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgc-cctataaatgtgttg 195  Q
    ||||||||||||||||||||||||||  | |||||||||||||||    
T  614478 attatttgcttgcaatttcttatgtaaacacctataaatgtgttg 614522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 36769159 - 36769207
Alignment:
Q  152 attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||| ||||| |  ||||||||||||||||||||    
T  36769159 attatttgcttgcaatttcatatgtaaacccctataaatgtgttgcaaa 36769207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 29846620 - 29846439
Alignment:
Q  18 aggggcggttctaaggtcgg-cgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | | ||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  29846620 aggggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 29846521  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    || | ||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  29846520 acccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 29846439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 14941994 - 14942176
Alignment:
Q  18 aggggcggttctaagg-tcggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| ||||||||||||| ||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  14941994 aggggcggttctaaggctcggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 14942093  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                |||||||||||||||||||||||||||||| |||||||||||||||||    
T  14942094 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccttataaatgtgttgcaaa 14942176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 42769708 - 42769890
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  42769708 aggggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 42769807  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                |||||||||||||||||||||||||| |||||||||||||||||||||    
T  42769808 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 42769890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 14186388 - 14186570
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||| ||||||| | || ||| |||||||||| ||||| |||||||||||||||| ||||| ||||| ||||||||    
T  14186388 aggggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataa 14186487  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14186488 acccctataaattgggcaatttctttacactttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 14186570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 19181726 - 19181544
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||| ||||| |  |||||  ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  19181726 aggggcggttctaaggcccggcgaccccggacactcgcctgggctatgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataa 19181627  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                |||||||||||||||||||||||||| |||||||||||||||||||||    
T  19181626 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 19181544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 40277238 - 40277420
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||    |||||| |||||||||| ||||||||||| || ||||||| ||||||||||| ||||||||    
T  40277238 aggggcggttctaaggcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataa 40277337  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |  | |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277338 atccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 3597840 - 3597929
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaatt 106  Q
    |||||||||||||||| | ||||||||| ||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  3597840 aggggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctataaatt 3597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 3956728 - 3956632
Alignment:
Q  39 gaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||||||||||| | |||||| ||| ||||| | ||| |||||| || ||||||| ||||| ||||| |||||||||| | | ||||||||||||    
T  3956728 gaccccgggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaacccctgtaaattggacaa 3956632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 3597952 - 3597999
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  3597952 attatttacttgcaatttcttacgtacgccctataaatgtattgcaaa 3597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 41674716 - 41674774
Alignment:
Q  77 tgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||||||||| |||||||  || | |||||||||||||||| ||||||||||||||||    
T  41674716 tgcaatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaa 41674774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 2888162 - 2888101
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||| |||||||| |||||||  |||| |||||||||||||||||| ||||||||| ||||    
T  2888162 ttttgtaatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaa 2888101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 14539704 - 14539766
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaatt 129  Q
    |||||| |||||||||||||| ||||| ||||| | ||||| ||||||||| || ||||||||    
T  14539704 ccaaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaatt 14539766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 33009799 - 33009733
Alignment:
Q  69 aaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||| |||| ||||||||| | ||||| ||||| ||||| |||||||||  ||||||||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaa 33009733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 1387373 - 1387421
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||  ||| || ||||||||||||||    
T  1387373 attatttgcttgcaatttcttatgtaaacccttacaaatgtgttgcaaa 1387421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 43139868 - 43139812
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattg 130  Q
    |||||||||||||| ||||| ||||| | ||||| |||||||||| | |||||||||    
T  43139868 ttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattg 43139812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 44994917 - 44995101
Alignment:
Q  17 taggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatata 115  Q
    ||||||||||||||||| | |||||||||||| |||| |||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| |||||||    
T  44994917 taggggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatata 44995016  T
Q  116 aa-ctcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44995017 aaccccttataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44995101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 21853375 - 21853194
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||||||||||||   |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  21853375 aggggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 21853276  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    |  | |||||||||| |||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  21853275 aaccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 21853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 8950452 - 8950636
Alignment:
Q  16 ataggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatat 114  Q
    |||||||||||||||||| | ||||||||||||||||| | ||||||  ||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  8950452 ataggggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatat 8950551  T
Q  115 aaactcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |||  | |||||||||| |||                |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8950552 aaatccctataaattgggcaatttctttacattttttattatttgcttgaaatttcttatgtacgccctataaatatgttgcaaa 8950636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 13856277 - 13856096
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||| |||||||  | |||||| |||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||    
T  13856277 aggggcggttctaaggcccggcgacccagggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataa 13856178  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    |  | ||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  13856177 atccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 13856096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 5391635 - 5391453
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    ||||||||||||| || | |||||||| |||||||| | |||||| || ||||| | |||  ||||||||||||||||| ||||| ||||| ||||||||    
T  5391635 aggggcggttctatggcccggcgaccctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataa 5391536  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | ||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391535 acccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 5391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 40845867 - 40846049
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||| |||||| || | |||| | |||| ||||| ||||||||||| |||||||||| ||||| ||||| ||||||||    
T  40845867 aggggcggttctaaggcccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataa 40845966  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40845967 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 32352999 - 32352843
Alignment:
Q  43 ccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaannnnnnn 142  Q
    |||||||||| | |||||| |||||||| | |||||||||||||||| ||||| ||||| ||||| |||||||||| | |||||||| | |||           
T  32352999 ccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttcttt 32352900  T
Q  143 nnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
             ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32352899 acattttttattatttgcttacaatttcttatgtacgccctataaatgtgttgcaaa 32352843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 23467579 - 23467626
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467579 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 23467626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 20382693 - 20382583
Alignment:
Q  20 gggcggttctaaggtcggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaact 119  Q
    ||||||||||| || |||||||||||||||||  | |||||| ||| |||||| ||||  |||||||| ||||||| ||||| ||||| ||||||||||     
T  20382693 gggcggttctatggccggcgaccccgggcacttgcccgggctccggcccaaat-ttttttaatttcttatgtaaatccctatgaatttcttatataaacc 20382595  T
Q  120 cttataaattgg 131  Q
    | ||||||||||    
T  20382594 cctataaattgg 20382583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 36539810 - 36539696
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||| | |||||| || | |||||| ||| | |||| || ||||||||||| ||||||| ||||||||||| ||||||||    
T  36539810 aggggcggttctaaggcctggcgagctcgggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataa 36539711  T
Q  117 actcttataaattgg 131  Q
     | | ||||||||||    
T  36539710 tcccctataaattgg 36539696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 50663255 - 50663199
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattg 130  Q
    |||||||||||||| |||| |||||| ||||||| |||||||||| |||||||||||    
T  50663255 ttttgcaatttcttatgtagattcctctaaatttcttatataaacccttataaattg 50663199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 19649379 - 19649440
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||| |||||||| |||||||  |||| ||||| |||||||||| ||||||||||||||||    
T  19649379 ttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaa 19649440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 54547025 - 54546964
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||||||||||||  |||||||||| | ||||| |||||||||| | ||||||||||||||    
T  54547025 ttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaa 54546964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 3178841 - 3178781
Alignment:
Q  57 gggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaa 117  Q
    ||||| ||| |||||| |||| ||||||||||||||||| ||||| ||||| |||||||||    
T  3178841 gggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaa 3178781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 22845362 - 22845430
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||| |||||||||||||| |||||||||   ||||||| |||||||||| | |||||||| |||||    
T  22845362 ccaaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaa 22845430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 43347336 - 43347400
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    |||||| |||||||||||||| ||||||||||| | ||||| |||||||||| | || |||||||    
T  43347336 ccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgg 43347400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 19649459 - 19649506
Alignment:
Q  152 attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||    
T  19649459 attatttgcttgcaatttcttatgtaattccctataaatgtgttgcaa 19649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 43347422 - 43347468
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||||    
T  43347422 attatttgcttgcaatttcttatgtaaaccctataattatgttgcaa 43347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 1781890 - 1781826
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    |||||| |||||||||||||| ||||||| ||| | ||||| |||||||||| |  |||||||||    
T  1781890 ccaaattttttgcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgg 1781826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 10839380 - 10839444
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    |||||| |||||||||||||| |||||||| || | ||||| ||||||||||   ||||||||||    
T  10839380 ccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgg 10839444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 10839466 - 10839514
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||  | |||||| ||||||||||||    
T  10839466 attatttgcttgcaatttcttatgtaaacacctatacatgtgttgcaaa 10839514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 46685784 - 46685851
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||| ||||||| |||||| ||||||| ||  ||||||| |||||||||||| |||||||| |||||    
T  46685784 ccaaattttttgca-tttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaa 46685851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 24694601 - 24694783
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||| |||| |||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  24694601 aggggcggttctaaggcccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 24694700  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |||| |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694701 actcctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 24694783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 9231804 - 9231985
Alignment:
Q  18 aggggcggttctaagg-tcggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| ||||||||||||||||||| | |||||| |||||||| | ||||||||||||||||||||||  |||| ||||| ||||||||    
T  9231804 aggggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataa 9231903  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    || | |||||||||| |||                |||||||||||||||||||||||||| ||||||||||||||||||||    
T  9231904 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaa 9231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 14309792 - 14309930
Alignment:
Q  61 ttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaannnnnnnnnnnnnnnnattatttgc 160  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||  | |||||||||| |||                |||||||||    
T  14309792 ttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgc 14309891  T
Q  161 ttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14309892 ttgcaatttcttatgtacgccctataaatgtgttgcaaa 14309930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 13627718 - 13627605
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||||  ||||||   |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  13627718 aggggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 13627619  T
Q  117 actcttataaattg 130  Q
    || | |||||||||    
T  13627618 acccctataaattg 13627605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 11084653 - 11084606
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084653 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 11084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 1727924 - 1727996
Alignment:
Q  58 ggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattg 130  Q
    |||| |||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||| | |||||||||    
T  1727924 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattg 1727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 11084767 - 11084667
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | || ||||||||||| || | |||| | || ||||| | |||||||||||||||||||||||||||| ||||| ||||||||    
T  11084767 aggggcggttctaaggcccggtgaccccgggca-tcgcccgggttccgagccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataa 11084669  T
Q  117 ac 118  Q
    ||    
T  11084668 ac 11084667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 24497527 - 24497638
Alignment:
Q  21 ggcggttctaagg-tcggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaact 119  Q
    ||||||||||||| ||||||| || ||||| |  | | |||| ||| |||||| ||||||||||| |||||||||||||| | ||||| ||||||||||     
T  24497527 ggcggttctaaggctcggcgagcctgggcagttgcacaggctccggcccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacc 24497626  T
Q  120 cttataaattgg 131  Q
    | ||||||||||    
T  24497627 cctataaattgg 24497638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 28750637 - 28750714
Alignment:
Q  54 ctcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    ||||||||  ||||||| | |||||||||||||| ||||||||| | | ||||| |||||||||| | ||||||||||    
T  28750637 ctcgggctctgggccaatttttttgcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgg 28750714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 13103119 - 13103182
Alignment:
Q  68 caaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    ||||| ||||||||||| || ||||||||||| | ||||| ||||||||||  |||||||||||    
T  13103119 caaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgg 13103182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 13627583 - 13627536
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    |||||||||||| | ||||||||||||| ||||||||| |||||||||    
T  13627583 attatttgcttgtactttcttatgtacgtcctataaatatgttgcaaa 13627536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 27863821 - 27863759
Alignment:
Q  74 ttttgcaattt-cttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||||||||| ||| |||||||| || | ||||| |||||||||| ||||||||||||||||    
T  27863821 ttttgcaattttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaa 27863759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 33934319 - 33934501
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||| ||||| | ||||||||||||||||| | |||||| | |||||||| |||||||||||||| ||||||||||||| ||||| ||||||||    
T  33934319 aggggcggttttaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataa 33934418  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33934419 acccctataaattgggcaatttttttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 33934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 42014050 - 42013872
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||||||||||||||||    |||| |||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  42014050 aggggcggttctaaggcccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 42013951  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttg 195  Q
    |||| |||||||||| |||                ||||||||||||||||||||||||||||||||||||||||||||    
T  42013950 actcctataaattgggcaatttctttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 42013872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 22324774 - 22324593
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | ||| ||||||||||||| | |||||| |||||||||| ||||| |||||||||||||||| ||||| ||||| ||||||||    
T  22324774 aggggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataa 22324675  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    || | |||||||||| |||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  22324674 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 22324593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 21525534 - 21525354
Alignment:
Q  20 gggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaac 118  Q
    |||||||||||||| | || |||||||||||||| |  ||||| |||| ||||| |||||||||||||||||||||| ||||| ||||| ||||||||||    
T  21525534 gggcggttctaaggcccggtgaccccgggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 21525435  T
Q  119 tcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
     | ||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21525434 ccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 21525354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 35806972 - 35806790
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||||||||||||   |||||| |||||||||| ||||||||||||||||||||||  |||| ||||| ||||||||    
T  35806972 aggggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataa 35806873  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35806872 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacaccctataaatgtgttgcaaa 35806790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 42072606 - 42072488
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    ||||||||||||| || | ||||||||||||||||| | |||||| |||||||| | |||||||||||||||||||||| ||||| ||||| ||||||||    
T  42072606 aggggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataa 42072507  T
Q  117 actcttataaattggacaa 135  Q
    || | ||||||||||||||    
T  42072506 acccctataaattggacaa 42072488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 26021575 - 26021391
Alignment:
Q  18 aggggcggttctaaggtc--ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatata 115  Q
    |||||||||||||||| |  || |||||||||||||  | |||||| || ||||||| |||||||||||||| ||||||| ||||| ||||| |||||||    
T  26021575 aggggcggttctaaggccccggtgaccccgggcactagcccgggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatata 26021476  T
Q  116 aactcttataaattggacaa-nnnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||| | ||||||||||  ||                 ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26021475 aacccctataaattgggtaatttctttacatttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 26021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 10112168 - 10112107
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    ||||||||||| || ||||||||||| | ||||| |||||||||||||||||||||||||||    
T  10112168 ttttgcaattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaa 10112107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 2824189 - 2824246
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    ||||||||||| || ||||||||||| ||||||| |||||||| | ||||||||||||    
T  2824189 ttttgcaattttttatgtaaattcctctaaatttcttatataaccccttataaattgg 2824246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 19334911 - 19334843
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||| |||||||||||||| | ||||||| ||| ||||||||||||||||   |||||||| |||||    
T  19334911 ccaaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaa 19334843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 19334825 - 19334778
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||| ||||||||||||||  |||||||||| |||||||||    
T  19334825 attatttgcttacaatttcttatgtaacccctataaatatgttgcaaa 19334778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 42072471 - 42072424
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||||    
T  42072471 attatttgcttgcaatttcttatgtaaacaatataaatgtgttgcaaa 42072424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 1535949 - 1535767
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||| |||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  1535949 aggggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataa 1535850  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                |||||||||||||||||||||||||| |||||||||||||||||||||    
T  1535849 acccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 1535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 25954889 - 25954746
Alignment:
Q  56 cgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaannnnnnnnnnnnnnnnatta 155  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||                ||||    
T  25954889 cgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacattttttatta 25954790  T
Q  156 tttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25954789 tttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 25954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 49284515 - 49284353
Alignment:
Q  37 gcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaan 136  Q
    |||| |||||||||||   |||||| |||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||| | |||||||||| |||     
T  49284515 gcgaacccgggcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaat 49284416  T
Q  137 nnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
                   |||||||| |||||||||||||||||||||||||||||||||||||||    
T  49284415 ttctttacattttttattatttgtttgcaatttcttatgtacgccctataaatgtgttgcaaa 49284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 37801253 - 37801396
Alignment:
Q  56 cgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaannnnnnnnnnnnnnnnatta 155  Q
    |||||| ||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||  | |||||||||| |||                ||||    
T  37801253 cgggctccgggctaaattttttgcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttacattttttatta 37801352  T
Q  156 tttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37801353 tttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 37801396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 36012136 - 36012317
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||| ||||||||  |||||||||||||||||| ||||||||||| |||||||||| ||||| ||||| ||||||||    
T  36012136 aggggcggttctaaggcccggcgaccctgggcactcg-tcgggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataa 36012234  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || | |||||||||| |||                |||||||||||||||||| ||||||| | | |||||||||||||||||    
T  36012235 acccctataaattgggcaatttctttacattttttattatttgcttgcaattttttatgtatgtcatataaatgtgttgcaaa 36012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 195
Target Start/End: Complemental strand, 34241132 - 34240993
Alignment:
Q  56 cgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaannnnnnnnnnnnnnnnatta 155  Q
    |||||| |||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||| | |||||||||| |||                ||||    
T  34241132 cgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttatta 34241033  T
Q  156 tttgcttgcaatttcttatgtacgccctataaatgtgttg 195  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34241032 tttgcttgcaatttcttatgtacgccctataaatgtgttg 34240993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 16338163 - 16338281
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||||||||| || | |||  | |||||||| | ||||||||||| |||||||||||||||| ||||||||||||||    
T  16338163 aggggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataa 16338262  T
Q  117 actcttataaattggacaa 135  Q
    |  | ||||||||||||||    
T  16338263 atccctataaattggacaa 16338281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 35019113 - 35018932
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||| |||||||| | ||||||  ||||||||| |||| |||||||||||||||| |||||| ||||| ||||||||    
T  35019113 aggggcggttctaaggcccggcgaccctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaa-tcctatgaatttcttatataa 35019015  T
Q  117 actcttataaattggacaannnnnnnnnnnnnnnnattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    || |||||||||| |  ||                ||||||||||||||||||||||||||| || |||||||||||||||||    
T  35019014 acccttataaattaggtaatttctttacattttttattatttgcttgcaatttcttatgtacaccttataaatgtgttgcaaa 35018932  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 36851357 - 36851438
Alignment:
Q  37 gcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaac 118  Q
    |||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||    
T  36851357 gcgaccccgggcactcgcctgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaac 36851438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 17888502 - 17888614
Alignment:
Q  20 gggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaac 118  Q
    ||||||||||| || | ||||||||||||||||| | |||||| ||| |||||| |||| ||||||||| ||||||||||||| ||||| |||||||| |    
T  17888502 gggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataacc 17888601  T
Q  119 tcttataaattgg 131  Q
     | ||||||||||    
T  17888602 ccctataaattgg 17888614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 16338329 - 16338375
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16338329 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 52632559 - 52632514
Alignment:
Q  154 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  52632559 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 52632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 20818727 - 20818631
Alignment:
Q  35 cggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    ||||||| |||||||||| | ||||||  |  |||||| |||||||||||||| ||||||| ||||| ||||| |||||||||||| ||||||||||    
T  20818727 cggcgactccgggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattgg 20818631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 11054615 - 11054520
Alignment:
Q  35 cggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    ||||||||||| |||||||| |||||| ||| |||| | |||||||||||||| ||||||| ||||| ||||| ||||||||||   ||||||||||    
T  11054615 cggcgaccccgagcactcacccgggctccggtccaatt-ttttgcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgg 11054520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 46474122 - 46474054
Alignment:
Q  67 ccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||| |||||||||||||| ||||||||||| | |||||||||||||||| | ||||||||| ||||    
T  46474122 ccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaa 46474054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 46583626 - 46583669
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttg 195  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  46583626 attatttgcttgcaatttcttatgtacgccatataaatgtgttg 46583669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 31377549 - 31377469
Alignment:
Q  35 cggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||||| | |||||| ||| |||||| |||| ||||||||| ||||||| ||||| ||||| ||||||||    
T  31377549 cggcgaccccgggcactcgcccgggctccggcccaaat-tttttcaatttcttatgtaaatccctatgaatttcttatataa 31377469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 54090307 - 54090244
Alignment:
Q  68 caaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    ||||| |||||||||| ||| ||||||| ||| | ||||| |||||||||||||||||||||||    
T  54090307 caaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgg 54090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 33982164 - 33982070
Alignment:
Q  35 cggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaatt 129  Q
    |||| ||||| |||| || |||||||||  | | |||| ||||  |||||||| ||||||| ||| ||||||| |||||||||||||||||||||    
T  33982164 cggcaaccccaggcagtcgctcgggctttagcctaaattttttaaaatttcttttgtaaatccctctaaatttcttatataaactcttataaatt 33982070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 50328917 - 50328856
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattggacaa 135  Q
    |||||||||||||| ||||||||||| | ||||| ||||||||||   ||||||||||||||    
T  50328917 ttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaa 50328856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 17888636 - 17888683
Alignment:
Q  152 attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||    
T  17888636 attatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 47084163 - 47084076
Alignment:
Q  44 cgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataaactcttataaattgg 131  Q
    ||||||| |||  ||||| ||| | |||| |||||||||||||| |||||||| || | ||||| |||||||||| | ||||||||||    
T  47084163 cgggcacgcacctgggctccggcctaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgg 47084076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 31377430 - 31377385
Alignment:
Q  154 tatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 198  Q
    ||||||||||||||||||||||||  || |||||||||||||||||    
T  31377430 tatttgcttgcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 19124745 - 19124789
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaac 118  Q
    |||||||||||||| ||||||||||| | ||||| ||||||||||    
T  19124745 ttttgcaatttcttatgtaaattcctctgaatttcttatataaac 19124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 54697 - 54579
Alignment:
Q  18 aggggcggttctaaggtc-ggcgaccccgggcactcactcgggcttcgggccaaatattttgcaatttcttgtgtaaattcctataaattttttatataa 116  Q
    |||||||||||||||| | |||||||||||||| || | |||  | |||||||| | ||||||||||| |||||||||||||||| ||||||||||||||    
T  54697 aggggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataa 54598  T
Q  117 actcttataaattggacaa 135  Q
    |  | ||||||||||||||    
T  54597 atccctataaattggacaa 54579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 54531 - 54485
Alignment:
Q  152 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54531 attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 54485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 20838 - 20899
Alignment:
Q  74 ttttgcaatttcttgtgtaaattcctataaattttttatataaa-ctcttataaattggacaa 135  Q
    |||||||||||||| ||||||||||| | ||||| ||||||||| ||| ||||||||||||||    
T  20838 ttttgcaatttcttatgtaaattcctctgaatttcttatataaagctc-tataaattggacaa 20899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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