View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_1 (Length: 597)
Name: NF9311_low_1
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_1 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 190 - 588
Target Start/End: Original strand, 28021432 - 28021830
Alignment:
| Q |
190 |
aaagagatttagattctttgtgatcgcattcatggatctcaattgcacaactctaatttctaaatatatttcaaaatacataatttatacaaatcatcta |
289 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28021432 |
aaagggatttagattctttgtgatcgcattcatggatctcaattgcacaactctaatttctaaatatatttcaaaatacataatttatacaaatcgtctg |
28021531 |
T |
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| Q |
290 |
atcttgatccaactatcaaaaatttcttgacaacgtgtatggaatttgtgtgtaggggaaactatatggacatgggatgatattctactgttgaatacaa |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28021532 |
atcttgatccaactatcaaaaatttcttgacaacgtgtatggaatttgtgtgtaggggaaactatatggacatgggatgatattctactgttgaatacaa |
28021631 |
T |
|
| Q |
390 |
gacaaatatatgatgttggatatgacatggttcttgtgcattgtcattcagctgctggcccagcctatgtatgtgccttatatatgcaaataagtttggt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28021632 |
gacaaatatatgatgttggatatgacatggttcttgtgcattgtcattcagctgctggcccagcctatgtatgtgccttatatatgcaaataagtttggt |
28021731 |
T |
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| Q |
490 |
gtgtgatggacttggccaggggaaactacgtttttatagagcctattcagtccctaaaaatttattttgttcttagattctagtggatacaagaataat |
588 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28021732 |
gtgtgatgagtctggccaggggaaactacgtttttatagagcctattcagtccctaaaaatttattttgttcttagattctagtggatacaagaataat |
28021830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 28021137 - 28021434
Alignment:
| Q |
19 |
cattgtccctaccaactgtgctatgctcacagggacagtacttaagttatttattcatgaaattttagatcagggtaaatacttctataatgtgaggatg |
118 |
Q |
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||||||| || ||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28021137 |
cattgtctctgccaactgcgctatgctcatggggacagtactgaaattatttattcatgaaattttagatcagggtaaatacttatataatgtgaggatg |
28021236 |
T |
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| Q |
119 |
tagacgagttatagtactttattcaaacctatccatt-----tttaaatgttgatctannnnnnnn-ctcaaaggagaaagagatttagattctttgtga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
28021237 |
tagacgagttatagtactttattcaaacctatccattattagtttaaatgtcaatctatttttttttctcaaaggagaaagggatttagattctttgtga |
28021336 |
T |
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| Q |
213 |
tcgcattcatggatctcaattgcacaactctaatttctaaatatatttcaaaatacataatttatacaaatcatctaatcttgatccaactatcaaaa |
310 |
Q |
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| T |
28021337 |
tcgcattcatggatctcaattgcacaactctaatttctaaatatatttcaaagtacataatttatacaaatcgtctgatcttgatccaactatcaaaa |
28021434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 7988877 - 7988843
Alignment:
| Q |
21 |
ttgtccctaccaactgtgctatgctcacagggaca |
55 |
Q |
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| T |
7988877 |
ttgtccctaccaactgagctatgctcacagggaca |
7988843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 1463900 - 1463864
Alignment:
| Q |
18 |
gcattgtccctaccaactgtgctatgctcacagggac |
54 |
Q |
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| T |
1463900 |
gcattgtccctgccaactgagctatgctcacagggac |
1463864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 11133105 - 11133068
Alignment:
| Q |
18 |
gcattgtccctaccaactgtgctatgctcacagggaca |
55 |
Q |
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| T |
11133105 |
gcattgtccctaccaactgagctatgctcacggggaca |
11133068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 12594 - 12558
Alignment:
| Q |
18 |
gcattgtccctaccaactgtgctatgctcacagggac |
54 |
Q |
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| T |
12594 |
gcattgtccctgccaactgagctatgctcacagggac |
12558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 37677672 - 37677640
Alignment:
| Q |
23 |
gtccctaccaactgtgctatgctcacagggaca |
55 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
37677672 |
gtccctaccaactgagctatgctcacagggaca |
37677640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 53355020 - 53355056
Alignment:
| Q |
18 |
gcattgtccctaccaactgtgctatgctcacagggac |
54 |
Q |
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| T |
53355020 |
gcattgtccctaccaactgagctatgctcacggggac |
53355056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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