View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_11 (Length: 461)
Name: NF9311_low_11
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Original strand, 54636690 - 54637124
Alignment:
| Q |
12 |
tgttcctgtgagtgagatgcatctggaactgatctgaattgtgtaattatcatggaattccttgctactgtattgcagggagagtgcgaactaattaaaa |
111 |
Q |
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| T |
54636690 |
tgttcctgtgagtgagatgcatctggaactgatctgaattgtgtaattatcatggaattccttgctactgtattgcagggagagtgcgaactaattaaaa |
54636789 |
T |
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| Q |
112 |
ttgatatcaattgccatattcaaggtgatgttgtgatcgagggtattaacttgaatgatgatatggagcatgaaatgatgatgttccgagttatgttcaa |
211 |
Q |
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| T |
54636790 |
ttgatatcaattgccatattcaaggtgatgttgtgatcgagggtattaacttgaatgatgatatggagcatgaaatgatgatgttccgagttatgttcaa |
54636889 |
T |
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| Q |
212 |
cacagcttttgttagatccaatattctgatgcttaatcgcgatgaaattgatgttctatgggatgctaaagatcactttccaaaagatttcagagctgag |
311 |
Q |
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| T |
54636890 |
cacagcttttgttagatccaatattctgatgcttaatcgcgatgaaattgatgttctatgggatgctaaagatcactttccaaaagatttcagagctgag |
54636989 |
T |
|
| Q |
312 |
gtagatttttgatttcatctataatcacacgggttttgttcgtaattttctaacactatttgttttttggaatatgtttgtgttaagatccttttctcag |
411 |
Q |
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| T |
54636990 |
gtagatttttgatttcatctataatcacacgggttttgttcgtaattttctaacactatttgttttttggaatatgtttgtgttaagatccttttctcag |
54637089 |
T |
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| Q |
412 |
agatagatgctgctgcagcagttattttagataat |
446 |
Q |
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| T |
54637090 |
agatagatgctgctgcagcagttattttagataat |
54637124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 306
Target Start/End: Original strand, 3236594 - 3236711
Alignment:
| Q |
189 |
atgatgttccgagttatgttcaacacagcttttgttagatccaatattctgatgcttaatcgcgatgaaattgatgttctatgggatgctaaagatcact |
288 |
Q |
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||||||||||| || ||||| || ||||| || | ||||| |||||| |||||||||| ||||||||||| || | ||||| || |||||||||||| |
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| T |
3236594 |
atgatgttccgggtgatgtttaatacagcattcataagatcaaatattttgatgcttaaccgcgatgaaatcgacatattatggaatactaaagatcact |
3236693 |
T |
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| Q |
289 |
ttccaaaagatttcagag |
306 |
Q |
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| T |
3236694 |
tccctaaaaatttcagag |
3236711 |
T |
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