View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_13 (Length: 459)
Name: NF9311_low_13
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 45 - 444
Target Start/End: Complemental strand, 36358204 - 36357805
Alignment:
| Q |
45 |
ttagctacacctgcaaatcttgtgcttggattccaaatattttggatcagaacaaacttttgacannnnnnnnnnnngatatggatcataagactaagtt |
144 |
Q |
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| T |
36358204 |
ttagctacacctgcaaatcttgtgcttggattccaaatattttggatcagaacaaacttttgacattttttctttttgatatggatcataagactaagtt |
36358105 |
T |
|
| Q |
145 |
atggatggtgtttttcttcttctcaagtgcaacatattgtgttgttgggaagccccaagtaccatgtcttttcatttttggagattctttatcagacagt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36358104 |
atggatggtgtttttcttcttctcaagtgcaacatattgtgttgttgggaagccccaagtaccatgtcttttcatttttggagattctttatcagacagt |
36358005 |
T |
|
| Q |
245 |
ggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtcctaccggaagatttaccaatggccgta |
344 |
Q |
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| T |
36358004 |
ggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtcctaccggaagatttaccaatggccgta |
36357905 |
T |
|
| Q |
345 |
cttcagttgacataatcagtaatattttctcatactttgaatatatttatgttgacaagtttcatattggacgagatatagtttgaaaatatgtttataa |
444 |
Q |
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| T |
36357904 |
cttcaattgacataatcagtaatattttctcacactttgaatatatttatgttgacaagttttatattggacgagatatagtttgaaaatatgtttataa |
36357805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 366
Target Start/End: Complemental strand, 5573573 - 5573428
Alignment:
| Q |
221 |
tttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtccta |
320 |
Q |
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| T |
5573573 |
tttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaa |
5573474 |
T |
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| Q |
321 |
ccggaagatttaccaatggccgtacttcagttgacataatcagtaa |
366 |
Q |
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| T |
5573473 |
ccggaagatttaccaacggtagaactgcaattgacataataagtaa |
5573428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 198 - 365
Target Start/End: Complemental strand, 5576758 - 5576591
Alignment:
| Q |
198 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgg |
297 |
Q |
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| T |
5576758 |
cccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatgg |
5576659 |
T |
|
| Q |
298 |
gattgattttccagctggtcctaccggaagatttaccaatggccgtacttcagttgacataatcagta |
365 |
Q |
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| T |
5576658 |
aattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagta |
5576591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 366
Target Start/End: Complemental strand, 5587127 - 5586959
Alignment:
| Q |
198 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgg |
297 |
Q |
| |
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||||||| || ||||| || || |||||||| |||||||| || |||||||||||||||||||| ||||| ||| ||| |||||||| || ||||| |
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| T |
5587127 |
cccaagtgccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatgg |
5587028 |
T |
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| Q |
298 |
gattgattttccagctggtcctaccggaagatttaccaatggccgtacttcagttgacataatcagtaa |
366 |
Q |
| |
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|| || ||||| || || || |||||||||||||| || || |||||| |||||||||||||||| |
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| T |
5587027 |
aatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaa |
5586959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 5593363 - 5593300
Alignment:
| Q |
198 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
261 |
Q |
| |
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||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
5593363 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
5593300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 7017710 - 7017571
Alignment:
| Q |
200 |
caagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatggga |
299 |
Q |
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| T |
7017710 |
caagtgccttgtctttttgtttttggtgactctttatctgacagtggaaacaacaatgatcttgttacaactgcaaaagttaattacaaaccatatggca |
7017611 |
T |
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| Q |
300 |
ttgattttccagctggtcctaccggaagatttaccaatgg |
339 |
Q |
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| T |
7017610 |
tcgattttccgacaggtccaacaggaaggtttactaatgg |
7017571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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