View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9311_low_15 (Length: 445)
Name: NF9311_low_15
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 28153213 - 28153373
Alignment:
| Q |
6 |
aataagctccatgattcacattttccaataattggagaaatacacgataaatcaattaattatgaacacacctcttgctcagatgaagatgtagaatgtg |
105 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| || ||| || ||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28153213 |
aataagctccatcattctcattttccaataattggagaaatgtacaatacatgcattaattataaacacacatcttgctcagatgaagatgtagaatgtg |
28153312 |
T |
|
| Q |
106 |
ttgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28153313 |
ttgtatgtctctccaaaatagaagaaggagatgaaattagagtattaaggtgtgatcatat |
28153373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 28148558 - 28148718
Alignment:
| Q |
6 |
aataagctccatgattcacattttccaataattggagaaatacacgataaatcaattaattatgaacacacctcttgctcagatgaagatgtagaatgtg |
105 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| || ||| || ||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
28148558 |
aataagctccatcgttctcattttccaataattggagaaatgtacaatacatgcattaattataaacacaaatcttgctcagatgaagatgtagaatgtg |
28148657 |
T |
|
| Q |
106 |
ttgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28148658 |
ttgtgtgtctctccaaaatagaagaaggagatgaaattagagtattaaggtgtgatcatat |
28148718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 17157286 - 17157440
Alignment:
| Q |
9 |
aagctccatgattcacattttccaataattggagaaatacacgataaatcaattaattatgaacacacctcttgctcagatgaagatgtagaatgtgttg |
108 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| | |||| || | |||||||||||||| | ||||| |||||||||| ||||||| || |
|
|
| T |
17157286 |
aagcttcatgattctaattttccaataattggagaaatatatgatatatgca---attatgaacacacccatggctcaaatgaagatgttgaatgtgctg |
17157382 |
T |
|
| Q |
109 |
tgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| | ||| || ||||| ||||| |
|
|
| T |
17157383 |
tgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgaccatat |
17157440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 26399519 - 26399363
Alignment:
| Q |
7 |
ataagctccatgattcacattttccaataattggagaaatacacgataaatcaattaattatgaacacacctcttgctcagatgaagatgtagaatgtgt |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| | || || | ||||||||| || |||| |||||| ||||||||||||||| |
|
|
| T |
26399519 |
ataagctccatgattctcattttccaataattgaagaaatgtatagtatatgca---attatgaacccatctctgactcagaggaagatgtagaatgttc |
26399423 |
T |
|
| Q |
107 |
tgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
26399422 |
tgtgtgtctatgtaaaatagaagaaggagatgagattagagtattgaggtgtgatcatat |
26399363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 17161259 - 17161362
Alignment:
| Q |
63 |
aattatgaacacacctcttgctcagatgaagatgtagaatgtgttgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatc |
162 |
Q |
| |
|
||||||||||||| | | ||||| |||||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||| | ||| || ||||| | |
|
|
| T |
17161259 |
aattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgacc |
17161358 |
T |
|
| Q |
163 |
atat |
166 |
Q |
| |
|
|||| |
|
|
| T |
17161359 |
atat |
17161362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 17164303 - 17164406
Alignment:
| Q |
63 |
aattatgaacacacctcttgctcagatgaagatgtagaatgtgttgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatc |
162 |
Q |
| |
|
||||||||||||| | | ||||| |||||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||| | ||| || ||||| | |
|
|
| T |
17164303 |
aattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgacc |
17164402 |
T |
|
| Q |
163 |
atat |
166 |
Q |
| |
|
|||| |
|
|
| T |
17164403 |
atat |
17164406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 19317323 - 19317479
Alignment:
| Q |
7 |
ataagctccatgattcacattttccaataattggagaaatacacgataaatcaattaattatgaacacacctcttgctcagatgaagatgtagaatgtgt |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| | ||| || | |||||||| || | || |||||| |||||||||||||||| |
|
|
| T |
19317323 |
ataagctccatgattctcattttccaataattggagaaatgtataatatatgca---attatgaatccatccctgactcagagaaagatgtagaatgtgt |
19317419 |
T |
|
| Q |
107 |
tgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||||| ||| | |||||||||||| |
|
|
| T |
19317420 |
tgtgtgtctatgcaaaatagaagaaggagatgatattagagtattgaagtgtgatcatat |
19317479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 25217333 - 25217255
Alignment:
| Q |
88 |
atgaagatgtagaatgtgttgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||| |
|
|
| T |
25217333 |
atgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatat |
25217255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 25225825 - 25225747
Alignment:
| Q |
88 |
atgaagatgtagaatgtgttgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||| |
|
|
| T |
25225825 |
atgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatat |
25225747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 25229146 - 25229068
Alignment:
| Q |
88 |
atgaagatgtagaatgtgttgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||| |
|
|
| T |
25229146 |
atgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatat |
25229068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 25233873 - 25233795
Alignment:
| Q |
88 |
atgaagatgtagaatgtgttgtgtgtctctccaaaatagaagaaggagatgaaattagagcattaaggtgtgatcatat |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||| |
|
|
| T |
25233873 |
atgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatat |
25233795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University