View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_16 (Length: 438)
Name: NF9311_low_16
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 2305215 - 2305476
Alignment:
| Q |
13 |
ttttttacgtgaggaagttgtaattgtattttgtacacgtat--ctccacaaacaatttcacgccgcctctccatctttttctttgtttcaatcaaaact |
110 |
Q |
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| T |
2305215 |
ttttttacgtgaggaagttgtaattgtattttgtacacgtatgtctccacaaacaatttcacgcc---tctccatctttttctttgtttcaatcaaaact |
2305311 |
T |
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| Q |
111 |
tataatttttagatactttgaagtttaattaggtaacggtatccacagaaaaaacaaatttaagattttaaattattttaaaatcaataaggataaaaga |
210 |
Q |
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| T |
2305312 |
tataatttttagatactttgaagtttaattaggtaacggtatccacaggaaaaacaaatttaggattttaaattattttaaaatcaataaaaataaaaga |
2305411 |
T |
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| Q |
211 |
atggcatatcattgaatgaataaaagttacatactcaaccaaattccatgaatacatctatctat |
275 |
Q |
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| T |
2305412 |
atggcatatcattgactgaataaaagttacatactcaaccaaattccatgaatacatctatctat |
2305476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 273 - 424
Target Start/End: Original strand, 2305498 - 2305649
Alignment:
| Q |
273 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctacaaatcacaacacaacctcgtctaactataatggattttgttcttagca |
372 |
Q |
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| T |
2305498 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctacaaatcacaacacaacctcgtctaactataatggattttgttcttagca |
2305597 |
T |
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| Q |
373 |
acctaataaactcaacaacaattgcactcctttatttcattattcccctatg |
424 |
Q |
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| T |
2305598 |
acctaataaactcaacaacaattgcactcctttatttcattattcccctatg |
2305649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 424
Target Start/End: Original strand, 2337821 - 2337970
Alignment:
| Q |
273 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctaca-aatcacaacacaacctcgtctaactataatggattttgttcttagc |
371 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||| |||||||| |
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| T |
2337821 |
tatatatattaagctaatactcatggcacatctatatccaccaatctcctacacaaacacaatacaacctcatctaactataatggatttggttcttagt |
2337920 |
T |
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| Q |
372 |
aacctaataaactcaacaacaattgcactcctttatttcattattcccctatg |
424 |
Q |
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| T |
2337921 |
agcctaataaacggcacaactattgcactcctttatt---ttattcccctatg |
2337970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 2337687 - 2337741
Alignment:
| Q |
168 |
atttaagattttaaattattttaaaatcaataaggataaaagaatggcatatcat |
222 |
Q |
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| T |
2337687 |
atttaagatttaaaattattttaacatcaataaaaataaaagtatgacatatcat |
2337741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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