View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_17 (Length: 437)
Name: NF9311_low_17
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 13897870 - 13898276
Alignment:
| Q |
13 |
agcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatct |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897870 |
agcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatct |
13897969 |
T |
|
| Q |
113 |
tgaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13897970 |
tgaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaa |
13898069 |
T |
|
| Q |
213 |
aatttgtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13898070 |
aatttgtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagatactat |
13898169 |
T |
|
| Q |
313 |
gtctctgaagtagtttcctttagggaaattactaaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898170 |
gtctctgaagtagtttcctttagggaaattactaaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtg |
13898269 |
T |
|
| Q |
413 |
aaccatg |
419 |
Q |
| |
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||||||| |
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| T |
13898270 |
aaccatg |
13898276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 13887333 - 13886955
Alignment:
| Q |
14 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
113 |
Q |
| |
|
||||| || |||||||| |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13887333 |
gcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
13887234 |
T |
|
| Q |
114 |
gaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaa |
213 |
Q |
| |
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||||||| || | ||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||| |||||||| |
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| T |
13887233 |
gaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaa |
13887134 |
T |
|
| Q |
214 |
atttgtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactatg |
313 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||||| |||||||||| ||||| ||||||||| || |
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| T |
13887133 |
ctttgttgaatgaaactcgatactcgctgttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaaatcagaaactgtg |
13887034 |
T |
|
| Q |
314 |
tctctgaagtagtttcctttagggaaattactaaactttgttttgagaagatgttctaaattttgaggttccgaggtta |
392 |
Q |
| |
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||| ||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
13887033 |
tctttgaagaagtttcctttagggaaaatattgaactttgttttgagaagatgttctaaattttgaggttctgaggtta |
13886955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 7295876 - 7295946
Alignment:
| Q |
14 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacatt |
84 |
Q |
| |
|
||||| || |||||| |||||| |||||| |||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
7295876 |
gcaaatggtatttcaaacaaatgtggttgtgaacaaccaggatcaacaccaaaagatatcatgcaaacatt |
7295946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 1034928 - 1035330
Alignment:
| Q |
14 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1034928 |
gcaaagggaatttcaggcaaatgaggttgtaagcaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatctt |
1035027 |
T |
|
| Q |
114 |
gaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaa |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
1035028 |
gaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaa |
1035127 |
T |
|
| Q |
214 |
atttgtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactatg |
313 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
1035128 |
atttgtcgaatgaaactcgatactagctattttcctttgtttctgccatgtttcattgtcagcagtgaaaataccgtctccgagtaattcagaaactatg |
1035227 |
T |
|
| Q |
314 |
tctctgaagtagtttcctttagggaaattactaaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtga |
413 |
Q |
| |
|
|||||||| |||||||||||||| || | | |||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
1035228 |
tctctgaaatagtttcctttaggataaacagtgaactttgttttgagaacatgttctaaatttcgaggttc---agttataacatagttgaggctagtga |
1035324 |
T |
|
| Q |
414 |
accatg |
419 |
Q |
| |
|
|||||| |
|
|
| T |
1035325 |
accatg |
1035330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 28667238 - 28667463
Alignment:
| Q |
44 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatg |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||||||||| | || | |||| | | || |
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|
| T |
28667238 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttatcaactg |
28667337 |
T |
|
| Q |
144 |
atgattctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctat |
243 |
Q |
| |
|
|| ||||| ||||||| ||||| | ||||||||||| | || ||| ||||||| || || || || ||||||||||||||||| |||||| | |
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|
| T |
28667338 |
attcatctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgt |
28667437 |
T |
|
| Q |
244 |
tttcctttgtttctgccatgtttcat |
269 |
Q |
| |
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||| |||||||| |||||| |||||| |
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|
| T |
28667438 |
ttttctttgtttttgccatatttcat |
28667463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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