View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_18 (Length: 434)
Name: NF9311_low_18
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 75 - 416
Target Start/End: Complemental strand, 6067166 - 6066825
Alignment:
| Q |
75 |
tttgtcttgaaatcagccaagaagatccattgaacttgagatggaattgtttgaagaatcatctctaagatatgtatcatccaaaggactaaaagaaggg |
174 |
Q |
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| T |
6067166 |
tttgtcttgaaatcaaccaagaagatccattgaacttgagatggaattgtttgaagaatcatctctaagatatgtatcatccaaaggactaaaagaaggg |
6067067 |
T |
|
| Q |
175 |
attaaaggactatgaatctgcatatcttttatcatttgtcgaagttccaaagcttcttctttaagctgagcattctcttgaacaacttgatcatgattct |
274 |
Q |
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| T |
6067066 |
attaaaggactatgaatctgcatatcttttatcatttgtcgaagttccaaagcttcttctttaagctgagcattctcttgaacaacttgatcatgattct |
6066967 |
T |
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| Q |
275 |
cagaaacatggttaagtttctctataagttgatgattttcattccttagccaaagaacttgtgaccaaagctcatcaaggtgtttctgcttcctcatgcg |
374 |
Q |
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| T |
6066966 |
cagaaacatggttaagtttctctataagttgatgattttcattccttagccaaagaacttgtgaccaaagctcatcaaggtgtttctgcttcctcatgcg |
6066867 |
T |
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| Q |
375 |
tgaacgacgcgctgattcgcggtttgatatcatccttctgtg |
416 |
Q |
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| T |
6066866 |
tgaacgacgcgctgattcgcggtttgatatcatccttctgtg |
6066825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 207 - 412
Target Start/End: Complemental strand, 5745028 - 5744823
Alignment:
| Q |
207 |
catttgtcgaagttccaaagcttcttctttaagctgagcattctcttgaacaacttgatcatgattctcagaaacatggttaagtttctctataagttga |
306 |
Q |
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| T |
5745028 |
catttgtcgaagttccgaagcttgttctttcaattgaacattctcttggacaactttatcatgagtctcacagaaattgttgagcttatctagtaattga |
5744929 |
T |
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| Q |
307 |
tgattttcattccttagccaaagaacttgtgaccaaagctcatcaaggtgtttctgcttcctcatgcgtgaacgacgcgctgattcgcggtttgatatca |
406 |
Q |
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| T |
5744928 |
tgattttcattccttagccaaacaacttgtgaccaaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgatacca |
5744829 |
T |
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| Q |
407 |
tccttc |
412 |
Q |
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| T |
5744828 |
ttcttc |
5744823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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