View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_19 (Length: 413)
Name: NF9311_low_19
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 40104189 - 40104590
Alignment:
| Q |
1 |
gctatcttaccatgtcaactaacaccttgagatactgttaacttagaggcgattaatccatagctatcttgatatacatgtcccacatctcagcatggac |
100 |
Q |
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| T |
40104189 |
gctatcttaccatgtcaactaacaccttgagatactgttaacttagaggcgactaatccatatcaatcttgatatacatgtaccacatctcagcatggac |
40104288 |
T |
|
| Q |
101 |
tacatcacaagaacaaatcctttatgcatatctctcaaacaagtaccattattatttcggaggagacccccataacgtgaaaagtttaactaaattttta |
200 |
Q |
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|||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| || |
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| T |
40104289 |
tacatcgcaagaaccaatccttcatgcatatctctcaaacaagtaccattattatttcggaggagactcccattacgtgaaaattttaactaaatttgta |
40104388 |
T |
|
| Q |
201 |
tgtacaccatcagaattgaacttgattcgccgcttccaaagatgcattgaatcaatgtataatatcattatatatgttgagtctatcaactcaacggtat |
300 |
Q |
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| T |
40104389 |
tgtacaccatcagaattgaacttgattcgccgcttccaaagatgccttgaatcaatgtataatatcattatatatgttgagtctatcaactctacggtgt |
40104488 |
T |
|
| Q |
301 |
ttgtttgcttacggctatcaatctccacaaccatctttagaagactacttggagatatctttaaaaatactcttgttttcttcacgtacgctctttagta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
40104489 |
ttgtttgcttacggctatcaatctccacaaccatctttagaagactacttggaggtatctttaaaaatactcttgttttctccacgcacgctctttagta |
40104588 |
T |
|
| Q |
401 |
ta |
402 |
Q |
| |
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|| |
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| T |
40104589 |
ta |
40104590 |
T |
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