View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_20 (Length: 397)
Name: NF9311_low_20
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 384
Target Start/End: Complemental strand, 36964357 - 36963979
Alignment:
| Q |
6 |
agtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttggg |
105 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36964357 |
agtgatgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggctatgggattttcaactggattttgggtattttggg |
36964258 |
T |
|
| Q |
106 |
gctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataa |
205 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36964257 |
gctcattaatactcattgcatcttggcgacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataa |
36964158 |
T |
|
| Q |
206 |
actgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcc |
305 |
Q |
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||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
36964157 |
actgcagaggaagcttcacactcaacaacctcccatgtaatcaagctctttgtttgctctgttattgtcttcagaaatataatagacaaaaattgtatcc |
36964058 |
T |
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| Q |
306 |
tgaatgttgatgattttgaataaagaatgttcgtcttaaatatcaactatctataacggataacaactgtctatattct |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36964057 |
tgaatgttgatgattttgaataaagaatgttcgtcttaaatatcaactatctataacggataacaactgtctatattct |
36963979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 333
Target Start/End: Complemental strand, 36976142 - 36975815
Alignment:
| Q |
6 |
agtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttggg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36976142 |
agtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattctacataagcatggcaatgggattttcaactggattttgggtattttggg |
36976043 |
T |
|
| Q |
106 |
gctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataa |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
36976042 |
gctcattaatactcattgcatcttggaggcatgcttatttccgttttctaggcaacatgaatgataagatctatgtcactgtagttgtcgcacttaataa |
36975943 |
T |
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| Q |
206 |
actgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcc |
305 |
Q |
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| T |
36975942 |
attgcggaagaagtttcacactcaacaacctcccatgtaaccaaactctttgtttgctctgttattgtgttcagaaatacaagagacaaaaattgtattg |
36975843 |
T |
|
| Q |
306 |
tgaatgttgatgattttgaataaagaat |
333 |
Q |
| |
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|| | ||||||||||||| |||||||| |
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| T |
36975842 |
agagtattgatgattttgagtaaagaat |
36975815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 78 - 354
Target Start/End: Complemental strand, 36970019 - 36969749
Alignment:
| Q |
78 |
ttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatct |
177 |
Q |
| |
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|||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |
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| T |
36970019 |
ttttcaactgcattttgggtattttggggatctttaatactcattgcatcttggagacatgcttatttctgttttctaagcaacatgaacgataagatct |
36969920 |
T |
|
| Q |
178 |
atgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttc |
277 |
Q |
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|||||||||| |||||||| |||||||| |||||| |||| ||| |||||||||| || |||||||| |||||||| | |||||||||||| ||| || |
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| T |
36969919 |
atgtcactgttgttgtcacgtttaataaattgcggaggaagtttcacactcaacaacct-ccatgtaaccaaactctgtatttgctctgttattgtgtta |
36969821 |
T |
|
| Q |
278 |
agaaatataagagacaaaaattgtatcctgaatgttgatgattttgaataaagaatgttcgtcttaaatatcaacta |
354 |
Q |
| |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36969820 |
agaaatataagagacaaaatttgtat-----gtgttgatgattttgaataaagaatgtttgtcttaaatatcaacta |
36969749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 36973361 - 36973230
Alignment:
| Q |
52 |
cattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
151 |
Q |
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|||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36973361 |
cattctacataagcattgctatggggttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
36973262 |
T |
|
| Q |
152 |
tctaagcaacttgaatgataagatctatgtca |
183 |
Q |
| |
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|||||||||| ||||||||| |||||| |||| |
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| T |
36973261 |
tctaagcaacatgaatgataggatctaagtca |
36973230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 333
Target Start/End: Complemental strand, 36973218 - 36973109
Alignment:
| Q |
224 |
cactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctgaatgttgatgattttg |
323 |
Q |
| |
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|||||||| | |||| |||||| |||||| | |||||||||| ||| || || ||||||| |||||||||||||||| || | ||||||||||||| |
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| T |
36973218 |
cactcaacgacctccaatgtaaccaaactatgtgtttgctctattattgcgttaagaaatacaagagacaaaaattgtctcaagttagttgatgattttg |
36973119 |
T |
|
| Q |
324 |
aataaagaat |
333 |
Q |
| |
|
|||||||||| |
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| T |
36973118 |
aataaagaat |
36973109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 5868962 - 5869336
Alignment:
| Q |
8 |
tgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttggggc |
107 |
Q |
| |
|
||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
5868962 |
tgacggcaaccatggagacaaggtattggggatggaaataaatccattatacataagcatggctatggggttttcaactggattttgggtattttgggga |
5869061 |
T |
|
| Q |
108 |
tcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaac |
207 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||| |||||||||||| |
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| T |
5869062 |
tctttaatactcattgcatcttggagacatgcttatttccgttttataagcaacatgaatgataagatccatgtcactgtagttgtcgcacttaataaac |
5869161 |
T |
|
| Q |
208 |
tgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctg |
307 |
Q |
| |
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|||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| | |
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|
| T |
5869162 |
tgcggaggaagtttcacactcaacaacctcccatgtaaccaaactctttgtttgctctgttattgtcttcagaaatagaagagacagaaattgtctccag |
5869261 |
T |
|
| Q |
308 |
aatgttgatgattttgaataaagaatgttcgtcttaaatatcaactatctataacggataacaactgtctatatt |
382 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | |||||| |
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|
| T |
5869262 |
tttgttgatgattttgaataaagaatgtttgtcttaaatatcaactatctataactgataacaactatatatatt |
5869336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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