View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_22 (Length: 370)
Name: NF9311_low_22
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 32259806 - 32260080
Alignment:
| Q |
8 |
aagcagagatgataagaaggaaggcatacatacatcatcatagtagtgagaaggcatcccttctagaagcacctcttccttttccttgttgacacatgtt |
107 |
Q |
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| T |
32259806 |
aagcagaaatgataagaaggaaggcatacatacatcatcatagtagtgagaaggcatcccttctagaagcacctcttccttttccttgttgacacatgtt |
32259905 |
T |
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| Q |
108 |
cttaaaactgtgacgaaaagcaaaataatgaatttagtgtgaaagtgagtgggtgtgattgaaatattaatagcggcggagactaacctggtgtggaagt |
207 |
Q |
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| T |
32259906 |
cttaaaactgtgaagaaaagaaaaataatgaatttagtgtgaaagtgagtgggtgtgattgaaatattagtagcggcggagactaacctggtgtggaagt |
32260005 |
T |
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| Q |
208 |
gcacttatatgnnnnnnnngagggatatggagaaggtgttgcagcaagaagggatgaagaataaaccggaaggaa |
282 |
Q |
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| T |
32260006 |
gcacttatatgaaaaaaaagagggatatggagaaggtgttgcagtaagaagggatgaagaataaaccggaaggaa |
32260080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 32260112 - 32260153
Alignment:
| Q |
314 |
ttcatccccataaagaaattaatgagttaaacccttgcttct |
355 |
Q |
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| T |
32260112 |
ttcatccccataaagaaattaatgagttaaacccttgcttct |
32260153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 8435580 - 8435648
Alignment:
| Q |
74 |
aagcacctcttccttttccttgttgacacatgttcttaaaactgtgacgaaaagcaaaataatgaattt |
142 |
Q |
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| T |
8435580 |
aagcacctcttccttatgcttgctgacaaatgtccttaaaactgtgaccaaaatccaaataataaattt |
8435648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 9621032 - 9621082
Alignment:
| Q |
54 |
tgagaaggcatcccttctagaagcacctcttccttttccttgttgacacat |
104 |
Q |
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| T |
9621032 |
tgaggaggcaacccatctagaagcacctcttccttttccttgctgagacat |
9621082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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