View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_24 (Length: 361)
Name: NF9311_low_24
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 1547736 - 1547374
Alignment:
| Q |
1 |
atcccaaccattgacttacacatttggtttgtttgttcgccaagtcaacatggcatgttcagtttggttgagatgaaattctagagccaattccagttct |
100 |
Q |
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| T |
1547736 |
atcccaaccattgacttacacatttggtttgtttgttcgccaagtcaacatggcatgttcagtttggttgagatgaaattctagagccaattccagttct |
1547637 |
T |
|
| Q |
101 |
atagttttggttgttgcaattaatttgaaccnnnnnnnnnnnncttaactccttttacttcatcaaaataacttaattacctccatgttttcactccaat |
200 |
Q |
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| T |
1547636 |
atagtttttgttgttgcaattaatttgaaccttttttctttttcttaactccttttacttcatcaaaataacttaattacctccatgttttctctccaac |
1547537 |
T |
|
| Q |
201 |
ggactaattccaatttgctagcttatttttcccacaatagcaaacta---cttcatttcaaaa-----taaaagaggaatacaaagtaaattatgatata |
292 |
Q |
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| T |
1547536 |
ggactaattccaatttgctagcttatttttcccacaatagcaaactacttcttcatttcaaaataaattaaaagaggaatacaaagtaaattatgatata |
1547437 |
T |
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| Q |
293 |
a--nnnnnnnnggatattaatcatgaacggtgttgcctatgttagattatgtgcaatttcatt |
353 |
Q |
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| T |
1547436 |
attttttttttggatattaatcatgaacggtgttgcctatgttagattatgtgcaatttcatt |
1547374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 1543722 - 1543606
Alignment:
| Q |
144 |
cttaactccttttacttcatcaaaataacttaattacctccatgttttcac-tccaatggactaattccaatttgctagcttatttttcccacaatagca |
242 |
Q |
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| T |
1543722 |
cttaattccttttactgcatcaaaatagcataattacctccaggttttctcatcccactggctaatttcaatttgctagctttattttcc-acagtagca |
1543624 |
T |
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| Q |
243 |
aactacttcatttcaaaa |
260 |
Q |
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| T |
1543623 |
aactacttcatttcaaaa |
1543606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 1543822 - 1543773
Alignment:
| Q |
16 |
ttacacatttggtttgtttgttcgccaagtcaacatggcatgttcagttt |
65 |
Q |
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| T |
1543822 |
ttacacatttggtttgtttgctcgccaagtcaacttggcatgtttagttt |
1543773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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