View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9311_low_26 (Length: 330)

Name: NF9311_low_26
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9311_low_26
NF9311_low_26
[»] chr3 (6 HSPs)
chr3 (19-311)||(49426252-49426544)
chr3 (19-304)||(49432497-49432785)
chr3 (27-133)||(17641083-17641189)
chr3 (25-87)||(49445331-49445393)
chr3 (27-85)||(49416040-49416098)
chr3 (25-158)||(43362340-43362472)
[»] chr1 (2 HSPs)
chr1 (19-139)||(1965589-1965709)
chr1 (54-86)||(41662531-41662563)
[»] chr8 (1 HSPs)
chr8 (19-139)||(25457687-25457807)
[»] chr2 (2 HSPs)
chr2 (34-86)||(985984-986036)
chr2 (46-85)||(996744-996783)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 49426544 - 49426252
Alignment:
Q  19 aagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49426544 aagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagaactcaaaacatatagaga 49426445  T
Q  119 gttattattatgcccaagggcctcccctatatgtgaagttgtgatcgattgcaagcaaggttctatgtaagtagcagttcttctattcacttctactttg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49426444 gttattattatgcccaagggcctcccctatatgtgaagttgtgatcgattgcaagcgaggttctatgtaagtagcagttcttctattcacttctactttg 49426345  T
Q  219 caactgttaggtttgatggtttgaatagtgaaccttgatgctcttgaattttgtatcagttcacaagtttaagaaaaattatcctttaacttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49426344 caactgttaggtttgatggtttgaatagtgaaccttgatgctcttgaattttgtatcagttcacaagtttaagaaaaattatcctttaacttt 49426252  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 49432785 - 49432497
Alignment:
Q  19 aagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagaga 118  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||  || ||| ||  |||||    
T  49432785 aagaaagtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatccattgtggtaaagacttcgaaatattaagaga 49432686  T
Q  119 gttattattatgcccaagggcctcccctatatgtgaagttgtgatcgattgcaagc-aaggttctatgtaag--tagcagttcttctattcacttctact 215  Q
    |||| | |||||||  ||||| || ||||||||||||||| | |   |||  | || ||    |||||||||  |||||||||||||||| |||||||||    
T  49432685 gttactcttatgccatagggcttctcctatatgtgaagttattacttattaaatgcaaacagcctatgtaagtatagcagttcttctattaacttctact 49432586  T
Q  216 ttgcaactgttaggtttgatggtttgaatagtgaaccttgatgctcttgaattttgtatcagttcacaagtttaagaaaaattatcctt 304  Q
    |||||||||||||||| ||  |||||| | ||||||||||||| ||||||| |||||||| || |||||||  | ||||||||||||||    
T  49432585 ttgcaactgttaggttcgacagtttgagttgtgaaccttgatgttcttgaactttgtatcggtgcacaagtccaggaaaaattatcctt 49432497  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 17641189 - 17641083
Alignment:
Q  27 gagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattat 126  Q
    |||||||||||||||| | | ||||| |||||||||| |||||||||||||||||||||  ||||  || |||| ||||||| | | ||||||||||| |    
T  17641189 gagcttctattggcaagaaacattctgaagaatgcaaaagttttgcaaaccatgaaaatacattgcagtgaagacctcaaaatagaaagagagttattct 17641090  T
Q  127 tatgccc 133  Q
    | |||||    
T  17641089 tgtgccc 17641083  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 49445393 - 49445331
Alignment:
Q  25 gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca 87  Q
    ||||||||||  |||||||| ||||| | |||||||||||||||||||||||||||| |||||    
T  49445393 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 49445331  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 49416040 - 49416098
Alignment:
Q  27 gagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaat 85  Q
    |||||||||||||||| | | ||| | |||||||| |||||||||||||||||||||||    
T  49416040 gagcttctattggcaagatacattttgaagaatgctagagttttgcaaaccatgaaaat 49416098  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 43362340 - 43362472
Alignment:
Q  25 gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttatt 124  Q
    |||||||| ||||||||| | ||||| | ||||||||||||||||||| ||||||| ||||| ||||  || | || ||||||  | | ||||| || |     
T  43362340 gtgagcttttattggcaatatatattgtgaagaatgcaagagttttgc-aaccatggaaatctattgcagtgacgaactcaaactagaaagagaattgtc 43362438  T
Q  125 attatgcccaagggcctcccctatatgtgaagtt 158  Q
     ||||| ||||||||||| |||| ||||||||||    
T  43362439 cttatgtccaagggcctctcctacatgtgaagtt 43362472  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 1965589 - 1965709
Alignment:
Q  19 aagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagaga 118  Q
    |||||||||||||||| ||||||| | |||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||  |||||| ||  |||||    
T  1965589 aagaaagtgagcttcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatcgattgtggtgaagacttcaaaatattaagaga 1965688  T
Q  119 gttattattatgcccaagggc 139  Q
    |||| | ||||||| ||||||    
T  1965689 gttactcttatgccaaagggc 1965709  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 41662563 - 41662531
Alignment:
Q  54 aagaatgcaagagttttgcaaaccatgaaaatc 86  Q
    ||||||||||||||||| |||||||||||||||    
T  41662563 aagaatgcaagagttttacaaaccatgaaaatc 41662531  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 25457807 - 25457687
Alignment:
Q  19 aagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagaga 118  Q
    |||||||||||| ||| ||||||| | |||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||  |||||| ||  |||||    
T  25457807 aagaaagtgagcatcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatcgattgtggtgaagacttcaaaatattaagaga 25457708  T
Q  119 gttattattatgcccaagggc 139  Q
    |||| | ||||||| ||||||    
T  25457707 gttactcttatgccaaagggc 25457687  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 986036 - 985984
Alignment:
Q  34 tattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatc 86  Q
    |||| |||| |||||||||||||||||||||| |||| |||||||||||||||    
T  986036 tattagcaagacatattctaaagaatgcaagaattttacaaaccatgaaaatc 985984  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 996783 - 996744
Alignment:
Q  46 atattctaaagaatgcaagagttttgcaaaccatgaaaat 85  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  996783 atattctaaagaatgcaagacttttacaaaccatgaaaat 996744  T

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