View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9311_low_29 (Length: 329)
Name: NF9311_low_29
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 42501478 - 42501764
Alignment:
| Q |
20 |
caacgatgacgacaaagacgaatctgaggacgaagaagatgacgaatcccctcaaggtagaaccgctattcctctttagtatcttatagtattattaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42501478 |
caacgatgacgacaaagacgaatctgaggacgaagaagatgacgaatcccctcaaggtagaaccgctattcctttttagtatcttatagtattattaaca |
42501577 |
T |
|
| Q |
120 |
tcgtttattgtcattctaaaaaattgattaatgtcaaagttactaattaccatgtagaacaaatataattactgacaatgttgttgttccatttgtactg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42501578 |
tcgtttattgtcattctaaaaaattgattaaggtcaaagttaccaattaccatgtagaacaaatataattactgacaatgttgttgttccatttgtacta |
42501677 |
T |
|
| Q |
220 |
tcttacgattttaaattttgagccttttgtatagtgtacgtgtaaaacttagttcttgtaaagtcggtgacgtacctgtaccacata |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42501678 |
tcttacaattttaaattttgagccttttgtatagtgtacgtgtaaaacttagttcttgtaaagtcggtgacgtacctgtaccacata |
42501764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University