View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_3 (Length: 578)
Name: NF9311_low_3
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Original strand, 36651728 - 36652282
Alignment:
| Q |
16 |
caaataccaagttagtttataccatttgaaggttactcttaatatttcaacacaaaaaacaatgactagtagttggttcttaaggtcaacaatatctgtc |
115 |
Q |
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| T |
36651728 |
caaataccaagttagtttataccatctgaaggttactcttaatacttcaacacaaaaaacaatgactagtagttggttcttaaggtcaacaatatctgtc |
36651827 |
T |
|
| Q |
116 |
aatgtctgctataaaagaaacaacaatacatgtttccatgacatatcatttgtaccaaatcataaacatgcctgaaagagtagttattttagttgatatg |
215 |
Q |
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| T |
36651828 |
aatgtctgctataaaagaaacaacaatacatgtttccatgacatatcatttgtactaaatcataaacatgcctgaaagagtagttattttagttgatata |
36651927 |
T |
|
| Q |
216 |
nnnnnnnccaaccaaaccaaagttgttaataacgcccgacatatttgtcattcaaaaaccacacgtttcctttttatttaataactattgagaatcaaaa |
315 |
Q |
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| T |
36651928 |
aaaaaaaccaaccaaaccaaagttgttaataacgcccgacatatttgtcattcaaaaaccacacatttcctttttatttaataactattgaggatcaaaa |
36652027 |
T |
|
| Q |
316 |
ggaactcacccattcagttagtcattctcaacttgagtgagtcaagatggttgtgttaccctcaccacttcatttttcaacttcatttctgagcagcgca |
415 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36652028 |
ggaactcactcattcagttagtcattctcaacttgagtgagtcaagatggttgtgttaccctcaccacttcatttttcaacttcatttctgagcagcgca |
36652127 |
T |
|
| Q |
416 |
accgcaagcaccattgttgcgctctgtgtattctttgcactcctttgcgcttgcatcatcattggccatcttctggaagatagtcgttgggccaatgagt |
515 |
Q |
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| T |
36652128 |
accgcaagcaccattgttgcgctctgtgtattcttcgcactcctttgcgcttgcatcatcattggccatcttctggaagatagtcgttgggccaatgagt |
36652227 |
T |
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| Q |
516 |
ctatcactgccctctttctggtattaaccaagacttaactcattcttcctatgct |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36652228 |
ctatcactgccctctttctggtattaaccaagacttaactcattcttcttatgct |
36652282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 36646993 - 36647110
Alignment:
| Q |
369 |
tgttaccctcaccacttcatttttcaacttcatttctgagcagcgcaaccgcaagcaccattgttgcgctctgtgtattctttgcactcctttgcgcttg |
468 |
Q |
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||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||| | || ||||||||||| |||||||| |||||||| |
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| T |
36646993 |
tgttaccctcaccacttgattcttcaacttcatatctgagca---------caagcaccattgtttcactttgtgtattcttcgcactcctctgcgcttg |
36647083 |
T |
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| Q |
469 |
catcatcattggccatcttctggaaga |
495 |
Q |
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| T |
36647084 |
catcatcgttggccaccttctcgaaga |
36647110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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