View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_31 (Length: 320)
Name: NF9311_low_31
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 44436620 - 44436321
Alignment:
| Q |
19 |
gttaattgttagaaggaattgcatatgtggactataatcaagcatcactttaccggtaggcaatttttgttttcccatcattttatctattgtgcaggcc |
118 |
Q |
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| T |
44436620 |
gttaattgttagaaggaattgcatatgtggactataatcaagcatcactttaccggtaggcaatttttgttttcccatcattttatctattgtgcaggcc |
44436521 |
T |
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| Q |
119 |
ttggtg--gtgagaaaaaatcacgcttctaatctagcctttgaagtatactgttacgcagctgctttaggaggcttcaaatgttagtatggcaaaaagat |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44436520 |
ttggtgtggtgagaaaaaatcacgcttctaatctagcctttgaagtatactgttacgcagctgctttaggaggcttcaaatgttagtatggcaaaaagat |
44436421 |
T |
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| Q |
217 |
atatagaggaaaatcaatagagatgtatgtagaattgtggtagagcatcatcctcatagaagatgacattcgcagcaaaaaatacgttcctatgcttctc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44436420 |
atatagaggaaaatcaatagagatgtatgtagaattgtggtagagcatcttcctcatagaagatgacattcgcagcaaaaaatacgttcctatgtttctc |
44436321 |
T |
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